View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9140J-LTR4-TNT-insertion-3 (Length: 562)
Name: F9140J-LTR4-TNT-insertion-3
Description: F9140J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9140J-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 520; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 8 - 552
Target Start/End: Original strand, 11809451 - 11809995
Alignment:
| Q |
8 |
gttgacttgttgtttaaggtgcaagcaaataattccttaagatttaagaagcacgcatgtttccattttcatggtgtctaagaattgtattcgagtatgg |
107 |
Q |
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| T |
11809451 |
gttgacttgttgtttaaggtgcaagcaaataattccttaagatttaagaagcacgcatgtttccattttcatggtttctaagaattgtattcgagtatgg |
11809550 |
T |
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| Q |
108 |
aagttaagaaatattatgctatgaagttgaatagaataatataaatgtggcaaattcttgatttgtttgtatactgattgtgaaatagatgatagtttaa |
207 |
Q |
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| T |
11809551 |
aagttaagaaatattatgctatgaagttgaatagaataatataaatgtggcaaattcttgatttgtttgtatactgattgtgaaatagatgatagtttaa |
11809650 |
T |
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| Q |
208 |
gcatatgaagttggaccctagattttgttcttgcatgttggagtttctatctcactaataggtcatgcatgcaagttnnnnnnngaaagtagcttgaaaa |
307 |
Q |
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| T |
11809651 |
gcatatgaagttggaccctagattttgttcttgcatgttggagtttctatctcactaataggtcatgcatgcaagttaaaaaaagaaagtagcttgaaaa |
11809750 |
T |
|
| Q |
308 |
tctcatccttgctagcctttattagatatgcaattgctctgtttcattcacatggtatttatagcagtgatcaccatcgtgatccataaacttcatgatg |
407 |
Q |
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| T |
11809751 |
tctcatccttgctagcctttattagatatgcaattgctctgtttcattcacatggtatttatagcagtgatcaccatcgtgatccataaacttcatgatg |
11809850 |
T |
|
| Q |
408 |
gaaaatttagagagctaacttctcaaaagcattatggtatgtttggagtaaataaattgtactagtttcactttcatctatgatttatttttggcactgt |
507 |
Q |
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| T |
11809851 |
gaaaatttagagagctaacttctcaaaagcattatggtatgtttggagtaaataaattgtactagtttcactttcatctatgatttatttttggcactgt |
11809950 |
T |
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| Q |
508 |
tttattatgtgaattcttcaaaacggcaactccagaaaactatta |
552 |
Q |
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| T |
11809951 |
tttattatgtgaattcttcaaaacggcaactccagaaaactatta |
11809995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 443
Target Start/End: Original strand, 11802397 - 11802445
Alignment:
| Q |
395 |
aaacttcatgatggaaaatttagagagctaacttctcaaaagcattatg |
443 |
Q |
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| T |
11802397 |
aaacttcatgatggaaaattcagaaagctaacttttccaaagcattatg |
11802445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 11802313 - 11802348
Alignment:
| Q |
182 |
tgattgtgaaatagatgatagtttaagcatatgaag |
217 |
Q |
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| T |
11802313 |
tgattgtgaaatatatgatagtttaagcatatgaag |
11802348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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