View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9140J-LTR4-TNT-insertion-4 (Length: 180)
Name: F9140J-LTR4-TNT-insertion-4
Description: F9140J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9140J-LTR4-TNT-insertion-4 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 7 - 171
Target Start/End: Complemental strand, 42585921 - 42585757
Alignment:
| Q |
7 |
aaatttaaagttaaaataatatttacgagtacttttctcagaggaatatttatgagtatatacctaaaatggagaatttcacnnnnnnnnntggaaaatt |
106 |
Q |
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| T |
42585921 |
aaatttaaagttaaaataatatttacgagtacttttctcagaggaatatttatgagtatatacctaaaatggagaatttcacaaaaaaaaatggaaaatt |
42585822 |
T |
|
| Q |
107 |
aaattattattttttgcttcggaaaattagttgtttgttttttaacaaaaataacctaacaattg |
171 |
Q |
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| T |
42585821 |
aaattattattttttgcttcggaaaattagttgtttgttttttaacaaaaataacctaacaattg |
42585757 |
T |
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