View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9140J-LTR4-TNT-insertion-6 (Length: 215)
Name: F9140J-LTR4-TNT-insertion-6
Description: F9140J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9140J-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 41128776 - 41128578
Alignment:
| Q |
7 |
agaggcttctcaaggttgggatgacatatgaaatatgaaacaaagtgtgatatatatgttgaccactgtgttatttatgtgtgttatatgctaaatatgt |
106 |
Q |
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| T |
41128776 |
agaggcttctcaaggttgggatgacatatgaaatatgaaacaaagtgtgatatatatgttgaccactgtgttatttatgtgtgttatatgctaaatatgt |
41128677 |
T |
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| Q |
107 |
atcttgagttcaattcttcaccaattcttgtaatgtttgaatcttggagaagttaaactcgttgctctaacataaatnnnnnnngcatattgtgaatta |
205 |
Q |
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| T |
41128676 |
atcttgagttcaattcttcaccaattcttgtaatgtttgaatcttggagaagttaaactcattgctctaacataaataaaaaaagcatattgtgaatta |
41128578 |
T |
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