View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9140J-LTR4-TNT-insertion-8 (Length: 461)
Name: F9140J-LTR4-TNT-insertion-8
Description: F9140J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9140J-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 175 - 453
Target Start/End: Original strand, 49641907 - 49642185
Alignment:
| Q |
175 |
caatgttgcaacgacactctttgatattttcgtttaaacaattgagagaattcaaatccaaacaattgcattttaaattagaatcaatctccaaaacaac |
274 |
Q |
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| T |
49641907 |
caatgttgcaacgacactctttgatattttcgtttaaacaattgagagaattcaaatccaaacaattgcattttaaattagaatcaatctccaaaacaac |
49642006 |
T |
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| Q |
275 |
gctgttttagaagataattatgtattttataaattgaatcatcgacaatccaaatctttgcagctgtatctgctgcttcattctcggtcaatggatcaaa |
374 |
Q |
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| T |
49642007 |
gctgttttagaagataattatgtattttataaattgaatcatcgacaatccaaatctttgcagctgtatctgctgcttcattctcggtcaatggatcaaa |
49642106 |
T |
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| Q |
375 |
tgaacgtaaagatataacaaaaaataaaattaagcaaattaacccccttcagttcgattcgattcggttaatatgatta |
453 |
Q |
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| T |
49642107 |
tgaacgtaaagatataacaaaaaataaaattaagcaaattaacccccttcagttcgattcgattcggttaatatgatta |
49642185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 49641740 - 49641835
Alignment:
| Q |
8 |
ttgtgtagatattctcataagcttttaannnnnnnnnnaaacaaaggttttactagagtactcttacaacattagaaatcaaaagtaagatttaac |
103 |
Q |
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| T |
49641740 |
ttgtgtagatattctcataagcttttaattttttttttaaacaaaggttttactagagtactcttacaacattagaaatcaaaagtaagatttaac |
49641835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 354 - 429
Target Start/End: Original strand, 49642207 - 49642281
Alignment:
| Q |
354 |
attctcggtcaatggatcaaatgaacgtaaagatataacaaaaaataaaattaagcaaattaacccccttcagttc |
429 |
Q |
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| T |
49642207 |
attctcggtcaatggatgaaatcaacgtaaagatataacaaaaaataaaattaagtaaattaa-ccccttcagttc |
49642281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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