View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9160J-LTR4-TNT-insertion-5 (Length: 449)
Name: F9160J-LTR4-TNT-insertion-5
Description: F9160J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9160J-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 8 - 439
Target Start/End: Complemental strand, 15242056 - 15241625
Alignment:
| Q |
8 |
catcaatgtagcattatgcaagtttggaaatacaacaatattcccaagattacatccaactcttttaaaccaattccctaaaattgcaacaaacaagttg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15242056 |
catcaatgtagcattatgcaagtttggaaatacaacaatattcccaagattacatccaactcttttaaaccaattccctaaaattgcaacaaacaagttg |
15241957 |
T |
|
| Q |
108 |
acttatactatcgtagagaatcaaaagacttgaccaaaacacagaacaaaatatcagtgttttcaaatgcagatcacggaaaatgatagtttgttcaaat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15241956 |
acttatactatcgtagagaatcaaaagacttgaccaaaacacagaacaaaatatcagtgttttcaaatgcagatcacggaaaatgatagtttgttcaaat |
15241857 |
T |
|
| Q |
208 |
ttaactacacaccacaccactatagacctatttgacaacattttgtgctaatagagagtattgcaaaacaacattgtaaacgatttactgcaacaaaaga |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15241856 |
ttaactacacaccacaccactatagacctatttgacaacattttgtgctaatagagagtattgcaaaacaacattgtaaacgatttactgcaacaaaaga |
15241757 |
T |
|
| Q |
308 |
acatcattaacgtcacattatcatataacaacaagaagggataaattagatagtgcctcatagtggtctccactttaaaaccaattcatcgaaattattt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15241756 |
acatcattaacgtcacattatcatataacaacaagaagggataaattagatagtgcctcatagtggtctccactttaaaaccaattcatcgaaattattt |
15241657 |
T |
|
| Q |
408 |
gaaacaatttgattaatcctactctatgaatt |
439 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
15241656 |
gaaacaatttgattaatcctactctatgaatt |
15241625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 34227444 - 34227386
Alignment:
| Q |
160 |
atcagtgttttcaaatgcagatcacggaaaatgatagtttgttcaaatttaactacaca |
218 |
Q |
| |
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||||||||| |||| ||| ||||| ||||||| | ||||||||||||||| |||||||| |
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|
| T |
34227444 |
atcagtgttgtcaattgccgatcatggaaaataacagtttgttcaaatttcactacaca |
34227386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 33651792 - 33651744
Alignment:
| Q |
170 |
tcaaatgcagatcacggaaaatgatagtttgttcaaatttaactacaca |
218 |
Q |
| |
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|||| |||||||||| |||||| ||||||||||||||||| ||||||| |
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|
| T |
33651792 |
tcaattgcagatcacagaaaatagtagtttgttcaaatttagctacaca |
33651744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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