View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9164J-LTR4-TNT-insertion-13 (Length: 655)
Name: F9164J-LTR4-TNT-insertion-13
Description: F9164J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9164J-LTR4-TNT-insertion-13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 636; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 8 - 647
Target Start/End: Complemental strand, 38216175 - 38215536
Alignment:
| Q |
8 |
aaaatacaatacaacaaaatctcattaactttatactatagtaagagaaatatcaatatgtctgacattgctatgttagtagctgaggagtatgagagaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38216175 |
aaaatacaatacaacaaaatctcattaactttatactatagtaagagaaatatcaatatgtctgacattgctatgttagtagctgaggagtatgagagaa |
38216076 |
T |
|
| Q |
108 |
gagtcaagagtttaaaaaatgctggtggtgctgctgctgtagaaacatgggagatcaacatgtcttcttgttattcactattcgtttccaagttgaagga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38216075 |
gagtcaagagtttaaaaaatgctggtggtgctgctgctgtagaaacatgggagatcaacatgtcttcttgttattcactattcgtttccaagttgaagga |
38215976 |
T |
|
| Q |
208 |
ggagaaaaggcaacttgttcagagtgttttggaacccaaaacccaatttgctattgctgcttctaacaacttcttttctgcttgatcaaataagtcgatc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38215975 |
ggagaaaaggcaacttgttcagagtgttttggaacccaaaacccaatttgctattgctgcttctaacaacttcttttctgcttgatcaaataagtcgatc |
38215876 |
T |
|
| Q |
308 |
attgatataatttacttactttgtttgctgtaatttgtttttattttatggtcttctagttttcatgaaatcttttgtacatagctatgcttggaatatg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38215875 |
attgatataatttacttactttgtttgctgtaatttgtttttattttatggtcttctagttttcatgaaatcttttgtacatagctatgcttggaatatg |
38215776 |
T |
|
| Q |
408 |
aatctgaattaacggttgtctttagagaatttctctcacataattaaggatttaaaggatattcacttggagtataaaattgatttgccacgtcaaaatt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38215775 |
aatctgaattaacggttgtctttagagaatttctctcacataattaaggatttaaaggatattcacttggagtataaaattgatttgccacgtcaaaatt |
38215676 |
T |
|
| Q |
508 |
caatcagttttacactcgcatctaatcaaaatctaatgttttgccacatcatctctattggttacttgatcattaaactctaaaaaatagtgggtcgata |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38215675 |
caatcagttttacactcgcatctaatcaaaatctaatgttttgccacatcatctctattggttacttgatcattaaactctaaaaaatagtgggtcgata |
38215576 |
T |
|
| Q |
608 |
attttgtgaccgaaacaaatatcttcatcatactaattgg |
647 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38215575 |
attttgtgaccgaaacaaatatcttcatcataccaattgg |
38215536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3401 times since January 2019
Visitors: 854