View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9164J-LTR4-TNT-insertion-2 (Length: 396)
Name: F9164J-LTR4-TNT-insertion-2
Description: F9164J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9164J-LTR4-TNT-insertion-2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 396
Target Start/End: Original strand, 45631924 - 45632310
Alignment:
| Q |
8 |
tctatcaccgtcacaaaatcattaggttcagtgtgtgaattgatggagaggaacccaagaaggagcagcacgtttcaagagaagaggaaaacagtagaaa |
107 |
Q |
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| T |
45631924 |
tctatcaccgtcacaaaatcattaggttcagtgtgtgaattgatggagaggaacccaagaaggagcagcacgtttcaagagaagaggaaaacagtagaaa |
45632023 |
T |
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| Q |
108 |
ggctaattgaggaaattagatacctcaaaacaggatgaacaaatcttcatcaatttctgtttccacatatgcaacaaatcttcattaaaacagannnnnn |
207 |
Q |
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| T |
45632024 |
ggctaattgaggaaattagatacctcaaaacaggatgaacaaatcttcatcaatttctgtttccacatatgcaacaaatcttcattaaaacagatttttt |
45632123 |
T |
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| Q |
208 |
nncttctttttaatgatgctaatcataaaccatggaggaggaagaattgggtaatgatnnnnnnnnnnnnnnnnnnttattcaaaattggctatcacata |
307 |
Q |
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| T |
45632124 |
ttcttctttttaatgatgctaatcataaaccatggaggaggaagaattgggtaatgat--aaaaaaaaaaaaaaaattattcaaaattggctatcacata |
45632221 |
T |
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| Q |
308 |
tcctacttttgattacaatgatgatgatagtgaaattaaaactatgnnnnnnnnnnnnncacagaaagagattacccgtgagagagaga |
396 |
Q |
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| T |
45632222 |
tcctacttttgattacgatgatgatgatagtgaaattaagactatgagaagaagagaaacacagaaagagattacccgtgagagagaga |
45632310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 42848321 - 42848374
Alignment:
| Q |
210 |
cttctttttaatgatgctaatcataaaccatggaggaggaagaattgggtaatg |
263 |
Q |
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| T |
42848321 |
cttcttttttatgatgcttatagtgaaccatggaagaggaagaattgggtaatg |
42848374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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