View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9164J-LTR4-TNT-insertion-4 (Length: 347)
Name: F9164J-LTR4-TNT-insertion-4
Description: F9164J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9164J-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 3 - 337
Target Start/End: Complemental strand, 335491 - 335157
Alignment:
| Q |
3 |
caacatcaccatcatcaactcaaataaagattctattactatgcatgcaattacaatgaagagtgtaaaaataatttggggcacagtgtagttgactggg |
102 |
Q |
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| T |
335491 |
caacaccaccatcatcaactcaaataaagattctattactatgcatgcaattacaatgaagagtgtaaaaataatttggggcacagtgtagttgactggg |
335392 |
T |
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| Q |
103 |
atttttatgaatccacatgcaatcacattcacttacaagaattaccagtcagaattcacagaagcatgtgagcacgtgtgcataattttcatatgcgggc |
202 |
Q |
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| T |
335391 |
atttttatgaatccacatgcaatcacattcacttacaagaattaccagtcagaattcacagaagcatgtgagcacgtgtgcataattttcatatgcgggc |
335292 |
T |
|
| Q |
203 |
ttccatatattcaaacacatgtttgcacgtgcacatgcacttctatctatacctctctcgtgtagtagtatactattattcttttcaactacaaaatgta |
302 |
Q |
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| T |
335291 |
ttccatatattcaaacacatgtttgcacgtgcacatgcacttctatctatacctctctcgtgtagtagtatactattattcttttcaactacaaaatgta |
335192 |
T |
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| Q |
303 |
cggtgtttattacgggttattatcaaaatttatta |
337 |
Q |
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| T |
335191 |
cggtgtttattacgggttattatcaaaatttatta |
335157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 48013459 - 48013516
Alignment:
| Q |
69 |
aaaaataatttggggcacagtgtagttgactgggatttttatgaatccacatgcaatca |
127 |
Q |
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| T |
48013459 |
aaaaaaaatttagggcacggtgcagttgactggga-ttttattaatccacatgcaatca |
48013516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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