View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9164J-LTR4-TNT-insertion-7 (Length: 579)
Name: F9164J-LTR4-TNT-insertion-7
Description: F9164J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9164J-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 25 - 296
Target Start/End: Original strand, 42509631 - 42509902
Alignment:
| Q |
25 |
ttatcaaattattctttcattttattttataaaaacnnnnnnncagagattgttatatgagaatttgttctaagaaaggtataaaatgcgacttcgtgta |
124 |
Q |
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| T |
42509631 |
ttatcaaattattctttcattttattttataaaaactttttttcagagattgttatatgagaatttgttctaagaaaggtataaaatgagacttcgtgta |
42509730 |
T |
|
| Q |
125 |
ttaagcattatgaactaatataggttcgctcgattgataaggattaagttcaaatctcgtaaggataactgcaaactaaactttgatggttggatgagca |
224 |
Q |
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| T |
42509731 |
ttaagcattatgaactaatataggttcgctcgattgataaggattaagttcaaatctcgtaaggataactgcaaactaaactttgatggttggatgagca |
42509830 |
T |
|
| Q |
225 |
agtttgagatttaaaaacagataatattagtatgannnnnnncaaaataagatatccatttgaaattacctc |
296 |
Q |
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| T |
42509831 |
agtttgagatttaaaaacagataatattagtatgatttttttcaaaataagatatccatttgaaattacctc |
42509902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 339 - 464
Target Start/End: Original strand, 42509945 - 42510070
Alignment:
| Q |
339 |
ttattaatcagaactttcccttgatatgatttttcaggtacacgagattaaaatcaaataattttaatgattcaacaattataattaattgatagtgtaa |
438 |
Q |
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| T |
42509945 |
ttattaatcagaactttcccttgatatgatttttcaggtacacgagattaaaatcaaataattttaatgattcaacaattataattaattgatagtgtaa |
42510044 |
T |
|
| Q |
439 |
ataattctcgcaatatcatggcatgc |
464 |
Q |
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| T |
42510045 |
ataattctcgcaatatcatggcatgc |
42510070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 433
Target Start/End: Complemental strand, 31765650 - 31765601
Alignment:
| Q |
384 |
gattaaaatcaaataattttaatgattcaacaattataattaattgatag |
433 |
Q |
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||||||||||||||| |||||||||| ||| ||||||||| |||||||| |
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| T |
31765650 |
gattaaaatcaaatatttttaatgatccaagtattataattgattgatag |
31765601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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