View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9164J-LTR4-TNT-insertion-8 (Length: 159)
Name: F9164J-LTR4-TNT-insertion-8
Description: F9164J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9164J-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 3e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 3e-74
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 9535902 - 9535762
Alignment:
| Q |
9 |
aatcaacaatcaatacaaatacattaaaaatgcctaatgcttagaagattgtatttaagcccttcaacaagcataacattttttctgctagatgtggaag |
108 |
Q |
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| T |
9535902 |
aatcaacaatcaatacaaatacattaaaaatgcctaatgcttagaagattgtatttaagcccttcaacaagcataacattttttctgctagatgtggaag |
9535803 |
T |
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| Q |
109 |
gatttccaacaacacctctactcagaattttacattgatta |
149 |
Q |
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| T |
9535802 |
gatttccaacaacacctctactcagaattttacattgatta |
9535762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 19166735 - 19166691
Alignment:
| Q |
43 |
taatgcttagaagattgtatttaagcccttcaacaagcataacat |
87 |
Q |
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| T |
19166735 |
taatgcttagacgattgtgtttaagcccttcaacaagcataacat |
19166691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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