View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9199J-LTR4-TNT-insertion-1 (Length: 135)
Name: F9199J-LTR4-TNT-insertion-1
Description: F9199J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9199J-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 1e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 14510534 - 14510651
Alignment:
| Q |
9 |
tatggaccttatttacacttctgttcgataagtatttgttgcaccaaagatgtattttgcgcccttagttggtgttgtgtttggaataggacgagtgctt |
108 |
Q |
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| T |
14510534 |
tatggaccttatttacacttctgttcgataagtatttgttgcaccaaagatgtattttgcgcccttagttggtgttgtgtttggaataggacgagtgctt |
14510633 |
T |
|
| Q |
109 |
tatagaccccttcaattg |
126 |
Q |
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| T |
14510634 |
tatagaccccttcaattg |
14510651 |
T |
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