View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: F9262-LTR4-TNT-insertion-1 (Length: 309)
Name: F9262-LTR4-TNT-insertion-1
Description: F9262-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] F9262-LTR4-TNT-insertion-1
Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 30058685 - 30058962
Alignment:
Q
11
tgtcggcttagccattggtttgggtcacgggctttcttgtgtatttcttccttttaaaatgagatttctgctcttttccctacacttttcgttcgcgctt
110
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
30058685
tgtcggcttagccattggtttgggtcacgggctttcttgtgtatttcttccttttaaaatgagatttctgctcttttccctacacttttcgttcgcgctt
30058784
T
Q
111
tgtagccataacgaaaatatccctactgcattagttaactaatgcaagtgtnnnnnnntgtgacttaaattacgcatttgtaaaaactaaatcacannnn
210
Q
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
T
30058785
tgtagccataacgaaaatatccctactgcattagttaactaatgcaagtgtaaaaaaatgtgacttaaattacgcatttgtaaaaactaaatcacatttt
30058884
T
Q
211
nnnnnacacttttcgtagtgcaaacaacccaaaagatccggtcgagctcaaatccatattaaaaaccaaatgttatta
288
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
30058885
tttttacacttttcgtagtgcaaacaacccaaaagatccggtcgagctcaaatccatattaaaaaccaaatgttatta
30058962
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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