View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9276-LTR4-TNT-insertion-2 (Length: 451)
Name: F9276-LTR4-TNT-insertion-2
Description: F9276-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9276-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 9 - 441
Target Start/End: Original strand, 24750314 - 24750746
Alignment:
| Q |
9 |
gtggtgccattgcaaacagtgagatcaagggtacaatttgtgaagatatcatcacttggacttatattttgtttgtctgtggttggagggaatatttctc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24750314 |
gtggtgccattgcaaacagtgagatcaagggtacaatttgtgaagatatcatcacttggacttatattttgtttgtctgtggttggagggaatatttctc |
24750413 |
T |
|
| Q |
109 |
taagatatcttcctgtgtcttttaatcaagctattggtgctacgacaccgttttttacggcggtttttgcttatcttatgacccttaagagggagggttg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24750414 |
taagatatcttcctgtgtcttttaatcaagctattggtgctacgacaccgttttttacggcggtttttgcttatcttatgacccttaagagggagggttg |
24750513 |
T |
|
| Q |
209 |
gcttacttatatggctcttgtacctgttgttactggtgttatgattgctagtggggtatgtcctctttcttatctcttgtcttttatctcttgtattatg |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24750514 |
gcttacttatatggctcttgtacctgttgttactggtgttatgattgctagtggggtatgtcctctttcttatctcttgtcttttatctcttgtattatg |
24750613 |
T |
|
| Q |
309 |
gtagcaatttaaagagtttttgtttaagtgatttgggtttttggagattcgttagggtcatggaaaacctcaacggtcaatgcgtcaccagaaatacata |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24750614 |
gtagcaatttaaagagtttttgtttaagtgatttgggtttttggagattcgttagggtcatggaaaacctcaacggtcaatgcgtcaccagaaatacata |
24750713 |
T |
|
| Q |
409 |
tagattatccaccaagccaacaaacttcaatta |
441 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
24750714 |
tagattatccaccaagccaacaaacttcaatta |
24750746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 96 - 269
Target Start/End: Original strand, 31330464 - 31330637
Alignment:
| Q |
96 |
gggaatatttctctaagatatcttcctgtgtcttttaatcaagctattggtgctacgacaccgttttttacggcggtttttgcttatcttatgaccctta |
195 |
Q |
| |
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||||||||||| || |||||||||||||||| |||||||| |||||||| || || || || || ||||| || ||||||||||| |||||||| ||| |
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| T |
31330464 |
gggaatatttcgcttcgatatcttcctgtgtcgtttaatcaggctattggcgcgactacgcctttctttactgccatttttgcttatattatgaccttta |
31330563 |
T |
|
| Q |
196 |
agagggagggttggcttacttatatggctcttgtacctgttgttactggtgttatgattgctagtggggtatgt |
269 |
Q |
| |
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||||||||| ||| || |||||| | | ||||| |||||||||||||||||| | |||||||||||||||||| |
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| T |
31330564 |
agagggaggcttgtctcacttatcttacccttgttcctgttgttactggtgttgttattgctagtggggtatgt |
31330637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 114 - 266
Target Start/End: Original strand, 35016286 - 35016438
Alignment:
| Q |
114 |
tatcttcctgtgtcttttaatcaagctattggtgctacgacaccgttttttacggcggtttttgcttatcttatgacccttaagagggagggttggctta |
213 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| || ||||||||||| ||||||||||||||| |||||| || || || |||| |||||||| |
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| T |
35016286 |
tatcttcctgtgtcgtttaatcaagctatcggtgctactacgccgttttttactgcggtttttgcttatgctatgacgctcaaaagagaggcttggctta |
35016385 |
T |
|
| Q |
214 |
cttatatggctcttgtacctgttgttactggtgttatgattgctagtggggta |
266 |
Q |
| |
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||||| | |||||||| |||||||||||||||||||| ||||||||||||||| |
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|
| T |
35016386 |
cttatcttgctcttgttcctgttgttactggtgttatcattgctagtggggta |
35016438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 118 - 266
Target Start/End: Complemental strand, 5779847 - 5779699
Alignment:
| Q |
118 |
ttcctgtgtcttttaatcaagctattggtgctacgacaccgttttttacggcggtttttgcttatcttatgacccttaagagggagggttggcttactta |
217 |
Q |
| |
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|||| ||||| ||||||||||||||||||||||| ||||| ||||| || || |||||||||||| || ||| || || |||| |||| ||||||| |
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| T |
5779847 |
ttccggtgtcgtttaatcaagctattggtgctactacaccttttttcaccgctgtttttgcttatgttgtgagtagaaaaagagaggcttgggttactta |
5779748 |
T |
|
| Q |
218 |
tatggctcttgtacctgttgttactggtgttatgattgctagtggggta |
266 |
Q |
| |
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| ||||| | ||||||||| |||||||| | ||||||||||||||| |
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|
| T |
5779747 |
tgctactcttttgcctgttgttgctggtgttgtcattgctagtggggta |
5779699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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