View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9276-LTR4-TNT-insertion-3 (Length: 539)

Name: F9276-LTR4-TNT-insertion-3
Description: F9276-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9276-LTR4-TNT-insertion-3
F9276-LTR4-TNT-insertion-3
[»] chr8 (5 HSPs)
chr8 (10-417)||(38276232-38276641)
chr8 (482-528)||(38276121-38276167)
chr8 (174-251)||(32049067-32049144)
chr8 (158-251)||(10177133-10177226)
chr8 (295-328)||(34273042-34273075)
[»] chr6 (2 HSPs)
chr6 (174-327)||(26219762-26219916)
chr6 (278-328)||(32343151-32343201)
[»] scaffold0219 (1 HSPs)
scaffold0219 (174-328)||(13302-13456)
[»] chr7 (6 HSPs)
chr7 (230-325)||(48693187-48693282)
chr7 (174-248)||(30279148-30279222)
chr7 (259-326)||(16698430-16698497)
chr7 (259-326)||(17672666-17672733)
chr7 (288-328)||(16757886-16757926)
chr7 (295-335)||(28557395-28557435)
[»] chr1 (4 HSPs)
chr1 (174-326)||(5953274-5953426)
chr1 (202-251)||(1031160-1031209)
chr1 (236-305)||(42282469-42282538)
chr1 (262-327)||(52193731-52193796)
[»] chr2 (4 HSPs)
chr2 (193-326)||(17296660-17296794)
chr2 (174-329)||(190176-190331)
chr2 (174-293)||(44723640-44723759)
chr2 (295-328)||(37028087-37028120)
[»] chr3 (3 HSPs)
chr3 (174-249)||(20844757-20844832)
chr3 (230-277)||(4806356-4806403)
chr3 (174-251)||(42980907-42980982)
[»] chr4 (3 HSPs)
chr4 (202-327)||(3742739-3742864)
chr4 (279-328)||(37709944-37709993)
chr4 (178-222)||(37709867-37709911)
[»] scaffold0229 (1 HSPs)
scaffold0229 (202-251)||(21998-22047)
[»] chr5 (3 HSPs)
chr5 (203-328)||(8463002-8463127)
chr5 (174-227)||(35446970-35447022)
chr5 (202-315)||(35908250-35908362)


Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 10 - 417
Target Start/End: Complemental strand, 38276641 - 38276232
Alignment:
Q  10 ttcaacggtgataaaatcggaaatacgaagggcgtgcgtaaaacgtatagggtgagaaaagaaattctcacatattttaggactggaccaagataggccc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38276641 ttcaacggtgataaaatcggaaatacgaagggcgtgcgtaaaacgtatagggtgagaaaagaaattctcacatattttaggactggaccaagataggccc 38276542  T
Q  110 aatatgatttgggctaataacatgctagcccaaccccca--ccttaatgggaaattgctctccccctttgtttttgctcattcacgtgcctacttgagtg 207  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38276541 aatatgatttgggctaataacatgctagcccaaccccccacccttaatgggaaattgctctccccctttgtttttgctcattcacgtgcctacttgagtg 38276442  T
Q  208 aactcatgctgaaaaatgttcggcgtgagttaactcacgttgaagggaccgagcgtgagttaactcatgtaggacataattaaggggatgagcaatttta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38276441 aactcatgctgaaaaatgttcggcgtgagttaactcacgttgaaaagaccgagcgtgagttaactcatgtaggacataattaagggaatgagcaatttta 38276342  T
Q  308 aaagggaggagagcaattttcccttaatgggatgtgtgccaaatagttggcctatggacatgtttatcttttggnnnnnnncccatcctctcgttctcgc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  38276341 aaagggaggagagcaattttcccttaatgggatgtgtgccaaatagttggcctatggacatgtttatcttttggtttttttcccatcctctcgttctcgc 38276242  T
Q  408 gcgtccttcg 417  Q
    ||||||||||    
T  38276241 gcgtccttcg 38276232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 482 - 528
Target Start/End: Complemental strand, 38276167 - 38276121
Alignment:
Q  482 aaaatccgaaatgtatcattttccctttcgagtccacctttggaatt 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  38276167 aaaatccgaaatgtatcattttccctttcgagtccacctttggaatt 38276121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 32049067 - 32049144
Alignment:
Q  174 tttgtttttgctcattcacgtgcctacttgagtgaactcatgctgaaaaatgttcggcgtgagttaactcacgttgaa 251  Q
    |||||||||||| ||||||||| |||| ||||| |||||| |||||||||||| | |||| |||||||||||||||||    
T  32049067 tttgtttttgcttattcacgtgtctacgtgagttaactcacgctgaaaaatgtccagcgtaagttaactcacgttgaa 32049144  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 10177133 - 10177226
Alignment:
Q  158 gaaattgctctcccccttt-gtttttgctcattcacgtgcctacttgagtgaactcatgctgaaaaatgttcggcgtgagttaactcacgttgaa 251  Q
    ||||||||||| | ||||| |||||||||||||||| |||||||  |||| |||||  | ||||||||| ||  |||||||||||||||||||||    
T  10177133 gaaattgctcttctccttttgtttttgctcattcacatgcctac-ggagttaactcgcgttgaaaaatgctcaacgtgagttaactcacgttgaa 10177226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 328
Target Start/End: Complemental strand, 34273075 - 34273042
Alignment:
Q  295 atgagcaattttaaaagggaggagagcaattttc 328  Q
    ||||||||||||||||||||| ||||||||||||    
T  34273075 atgagcaattttaaaagggagaagagcaattttc 34273042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 174 - 327
Target Start/End: Complemental strand, 26219916 - 26219762
Alignment:
Q  174 tttgtttttgctcattcacgtgcctacttgagtgaactcatgctga--aaaatgttcggcgtgagttaactcacgttgaagggaccgagcgtgagttaac 271  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||  |||||||||  |||||||||| ||||||| ||     |||||||||||||||    
T  26219916 tttgtttttgctcattcatgtgcctacttgagttaactcatgctgaaaaaaatgttcatcgtgagttaattcacgttaaaaaagtcgagcgtgagttaac 26219817  T
Q  272 tcatgtaggacataattaaggggatgagcaattttaaaagggaggagagcaatttt 327  Q
    ||||||| || ||||||||||| |||| |||||||||||| ||| |||||||||||    
T  26219816 tcatgta-gagataattaagggaatgaacaattttaaaagagagaagagcaatttt 26219762  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 328
Target Start/End: Original strand, 32343151 - 32343201
Alignment:
Q  278 aggacataattaaggggatgagcaattttaaaagggaggagagcaattttc 328  Q
    |||| |||| |||||| ||||||||||||||||| ||| ||||||||||||    
T  32343151 aggatataagtaagggaatgagcaattttaaaagtgagaagagcaattttc 32343201  T

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Target: scaffold0219 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 174 - 328
Target Start/End: Complemental strand, 13456 - 13302
Alignment:
Q  174 tttgtttttgctcattcacgtgcctacttgagtgaactcatgctgaaaaatgttcggcgtgagttaactcacgttgaagggaccgagcgtgagttaactc 273  Q
    ||||||||||| |||| ||||  ||| |||||| ||||||||||||||||||||| ||||||| ||||||||||| ||     |||||||||||||||||    
T  13456 tttgtttttgcacatttacgtatctagttgagttaactcatgctgaaaaatgttcagcgtgagctaactcacgttaaaaaagtcgagcgtgagttaactc 13357  T
Q  274 atgtaggacataattaaggggatgagcaattttaaaagggaggagagcaattttc 328  Q
    ||||  ||||||| |||||| |||| |||||||  | ||||| || |||||||||    
T  13356 atgttagacataaataagggaatgaacaattttggatgggagaagtgcaattttc 13302  T

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Target: chr7 (Bit Score: 56; Significance: 6e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 230 - 325
Target Start/End: Original strand, 48693187 - 48693282
Alignment:
Q  230 gcgtgagttaactcacgttgaagggaccgagcgtgagttaactcatgtaggacataattaaggggatgagcaattttaaaagggaggagagcaatt 325  Q
    ||||||||||||||||||||||   ||| |||||||||||||||| |  ||||||||||||||| ||||| ||||||||||||||| |||||||||    
T  48693187 gcgtgagttaactcacgttgaaaaaaccaagcgtgagttaactcacgctggacataattaagggaatgagtaattttaaaagggagaagagcaatt 48693282  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 174 - 248
Target Start/End: Complemental strand, 30279222 - 30279148
Alignment:
Q  174 tttgtttttgctcattcacgtgcctacttgagtgaactcatgctgaaaaatgttcggcgtgagttaactcacgtt 248  Q
    |||||||||||||||||||||| |||| ||||| |||||| |||||||||||| |  | ||||||||||||||||    
T  30279222 tttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaatgtccaacttgagttaactcacgtt 30279148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 16698430 - 16698497
Alignment:
Q  259 agcgtgagttaactcatgtaggacataattaaggggatgagcaattttaaaagggaggagagcaattt 326  Q
    ||||||||||||||||||  | ||||  ||||||| ||||||||||||||||||||| ||||||||||    
T  16698430 agcgtgagttaactcatgctgaacatttttaagggaatgagcaattttaaaagggagaagagcaattt 16698497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 17672666 - 17672733
Alignment:
Q  259 agcgtgagttaactcatgtaggacataattaaggggatgagcaattttaaaagggaggagagcaattt 326  Q
    ||||||||||||||||||  | ||||  ||||||| ||||||||||||||||||||| ||||||||||    
T  17672666 agcgtgagttaactcatgctgaacatttttaagggaatgagcaattttaaaagggagaagagcaattt 17672733  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 16757926 - 16757886
Alignment:
Q  288 taaggggatgagcaattttaaaagggaggagagcaattttc 328  Q
    |||||| ||||||||||||||||||||| |||| |||||||    
T  16757926 taagggaatgagcaattttaaaagggagaagagtaattttc 16757886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 28557395 - 28557435
Alignment:
Q  295 atgagcaattttaaaagggaggagagcaattttcccttaat 335  Q
    ||||| ||||||||||||||| ||| |||||||||||||||    
T  28557395 atgagtaattttaaaagggagaagaacaattttcccttaat 28557435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 174 - 326
Target Start/End: Complemental strand, 5953426 - 5953274
Alignment:
Q  174 tttgtttttgctcattcacgtgcctacttgagtgaactcatgctgaaaaatgttcggcgtgagttaactcacgttgaagggaccgagcgtgagttaactc 273  Q
    |||||||||  |||||||| ||||||| ||||| |||||||  |||||||||| | || |||||||||||| ||||||  | |||||| ||||||||||     
T  5953426 tttgttttttatcattcacatgcctacgtgagttaactcatattgaaaaatgtccagcttgagttaactcaagttgaaaaggccgagcctgagttaacta 5953327  T
Q  274 atgtaggacataattaaggggatgagcaattttaaaagggaggagagcaattt 326  Q
    | ||  ||||||| |||||| |||  ||||||| |||||||| ||||||||||    
T  5953326 acgttagacataaataagggaatgctcaattttgaaagggagaagagcaattt 5953274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 1031209 - 1031160
Alignment:
Q  202 tgagtgaactcatgctgaaaaatgttcggcgtgagttaactcacgttgaa 251  Q
    ||||| |||||| |||||||||||||| ||||||||||||||| ||||||    
T  1031209 tgagttaactcacgctgaaaaatgttcagcgtgagttaactcaagttgaa 1031160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 305
Target Start/End: Original strand, 42282469 - 42282538
Alignment:
Q  236 gttaactcacgttgaagggaccgagcgtgagttaactcatgtaggacataattaaggggatgagcaattt 305  Q
    ||||||||| ||||||   | ||| |||||||||||||| || || |||||||||||| |||||||||||    
T  42282469 gttaactcatgttgaaaaaatcgaacgtgagttaactcacgttgggcataattaagggaatgagcaattt 42282538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 327
Target Start/End: Complemental strand, 52193796 - 52193731
Alignment:
Q  262 gtgagttaactcatgtaggacataattaaggggatgagcaattttaaaagggaggagagcaatttt 327  Q
    |||| ||||||||||| |||||||| |||||| |||| ||||||| |||||||  |||||| ||||    
T  52193796 gtgaattaactcatgttggacataagtaagggaatgaacaattttgaaagggacaagagcattttt 52193731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 193 - 326
Target Start/End: Original strand, 17296660 - 17296794
Alignment:
Q  193 gtgcctacttgagtgaactcatgctgaaaaatgttcggcgtgagttaactcacgttgaaggga-ccgagcgtgagttaactcatgtaggacataattaag 291  Q
    |||||||| ||||| || ||| |||||||||||  |   ||||||||||||||||||||   | |||||||| | |||||||| || || ||||||||||    
T  17296660 gtgcctacatgagttaaatcacgctgaaaaatgcccaatgtgagttaactcacgttgaaaaaagccgagcgtaacttaactcacgttgggcataattaag 17296759  T
Q  292 gggatgagcaattttaaaagggaggagagcaattt 326  Q
    ||||||||||||||| || ||||| ||||||||||    
T  17296760 gggatgagcaattttgaatgggagaagagcaattt 17296794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 174 - 329
Target Start/End: Original strand, 190176 - 190331
Alignment:
Q  174 tttgtttttgctcattcacgtgcctacttgagtgaactcatgctgaaaaatgttcggcgtgagttaactcacgttgaagggaccgagcgtgagttaactc 273  Q
    |||||||||||||||||||  ||| || ||| | |||||| | |||||||||||    |||||||||||||| |||||    |||| |||||||||||||    
T  190176 tttgtttttgctcattcacacgccaacatgaattaactcacgatgaaaaatgttgaatgtgagttaactcacattgaaaaagccgaacgtgagttaactc 190275  T
Q  274 atgtaggacataattaaggggatgagcaattttaaaagggaggagagcaattttcc 329  Q
    |    |||||| ||||| |  ||||||||||||||||| ||| |||||||||||||    
T  190276 accatggacatgattaatgaaatgagcaattttaaaagagagaagagcaattttcc 190331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 293
Target Start/End: Complemental strand, 44723759 - 44723640
Alignment:
Q  174 tttgtttttgctcattcacgtgcctacttgagtgaactcatgctgaaaaatgttcggcgtgagttaactcacgttgaagggaccgagcgtgagttaactc 273  Q
    |||||||||||||| |||||||||||| ||||| |||| | |||| |||||| | ||| |||||||||||| ||||||     ||||| ||||||||||     
T  44723759 tttgtttttgctcactcacgtgcctacgtgagttaacttacgctgcaaaatgcttggcctgagttaactcaagttgaaatagtcgagcatgagttaactt 44723660  T
Q  274 atgtaggacataattaaggg 293  Q
    ||||  || |||||||||||    
T  44723659 atgttagatataattaaggg 44723640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 328
Target Start/End: Complemental strand, 37028120 - 37028087
Alignment:
Q  295 atgagcaattttaaaagggaggagagcaattttc 328  Q
    ||||||||||||||||||||| ||||||||||||    
T  37028120 atgagcaattttaaaagggagaagagcaattttc 37028087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 20844757 - 20844832
Alignment:
Q  174 tttgtttttgctcattcacgtgcctacttgagtgaactcatgctgaaaaatgttcggcgtgagttaactcacgttg 249  Q
    |||||||||||||||||||||| |||| ||||| |||||| |||||||||| | | |||| |||||||||||||||    
T  20844757 tttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaatatccagcgtaagttaactcacgttg 20844832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 277
Target Start/End: Original strand, 4806356 - 4806403
Alignment:
Q  230 gcgtgagttaactcacgttgaagggaccgagcgtgagttaactcatgt 277  Q
    |||||| |||||||||||||| || ||||| |||||||||||||||||    
T  4806356 gcgtgacttaactcacgttgatggtaccgaacgtgagttaactcatgt 4806403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 42980907 - 42980982
Alignment:
Q  174 tttgtttttgctcattcacgtgcctacttgagtgaactcatgctgaaaaatgttcggcgtgagttaactcacgttgaa 251  Q
    ||||||||||||||||| | ||||||| ||||| | |||||||| |||||||| |  ||||| |||||||||||||||    
T  42980907 tttgtttttgctcattctcatgcctacgtgagttagctcatgct-aaaaatgtcctacgtga-ttaactcacgttgaa 42980982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 327
Target Start/End: Complemental strand, 3742864 - 3742739
Alignment:
Q  202 tgagtgaactcatgctgaaaaatgttcggcgtgagttaactcacgttgaagggaccgagcgtgagttaactcatgtaggacataattaaggggatgagca 301  Q
    ||||| |||||| | | ||||||||||   |||| |||||| ||||||||    |||| ||||||||||||||||| | |||||||||||||  ||||||    
T  3742864 tgagttaactcacgttaaaaaatgttcattgtgaattaacttacgttgaaaaagccgaacgtgagttaactcatgttgaacataattaagggattgagca 3742765  T
Q  302 attttaaaagggaggagagcaatttt 327  Q
    ||||| |||||||| ||| |||||||    
T  3742764 attttgaaagggagaagaacaatttt 3742739  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 328
Target Start/End: Original strand, 37709944 - 37709993
Alignment:
Q  279 ggacataattaaggggatgagcaattttaaaagggaggagagcaattttc 328  Q
    ||||||||||||||| |||||||||||| |||||||| ||||||||||||    
T  37709944 ggacataattaagggaatgagcaattttcaaagggagaagagcaattttc 37709993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 37709867 - 37709911
Alignment:
Q  178 tttttgctcattcacgtgcctacttgagtgaactcatgctgaaaa 222  Q
    ||||||||||||||||| ||||||||||| |||||||||| ||||    
T  37709867 tttttgctcattcacgttcctacttgagtcaactcatgctaaaaa 37709911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 22047 - 21998
Alignment:
Q  202 tgagtgaactcatgctgaaaaatgttcggcgtgagttaactcacgttgaa 251  Q
    ||||| |||||| |||||||||||||| ||||||||||||||| ||||||    
T  22047 tgagttaactcacgctgaaaaatgttcagcgtgagttaactcaagttgaa 21998  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 8463002 - 8463127
Alignment:
Q  203 gagtgaactcatgctgaaaaatgttcggcgtgagttaactcacgttgaaggga-ccgagcgtgagttaactcatgtaggacataattaaggggatgagca 301  Q
    |||| ||||||||||||||||||| |  | |||||||||||||||||||   |  |||||||||||||||||| |  | ||||  || |||  |||||||    
T  8463002 gagttaactcatgctgaaaaatgtccaacctgagttaactcacgttgaaaaaagtcgagcgtgagttaactcacgccgaacat-tttcaggaaatgagca 8463100  T
Q  302 attttaaaagggaggagagcaattttc 328  Q
    |||||||||||||| | | ||||||||    
T  8463101 attttaaaagggagaaaaacaattttc 8463127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 35446970 - 35447022
Alignment:
Q  174 tttgtttttgctcattcacgtgcctacttgagtgaactcatgctgaaaaatgtt 227  Q
    |||||||||||||||||||||| |||| ||||| |||||| ||| |||||||||    
T  35446970 tttgtttttgctcattcacgtg-ctacgtgagttaactcacgcttaaaaatgtt 35447022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 315
Target Start/End: Complemental strand, 35908362 - 35908250
Alignment:
Q  202 tgagtgaactcatgctgaaaaatgttcggcgtgagttaactcacgttgaagggaccgagcgtgagttaactcatgtaggacataattaaggggatgagca 301  Q
    ||||| |||||||||| |||||||| |  ||||||||| ||||| |||||     ||||||| |||||||||  |  | ||||||||||||| |||||||    
T  35908362 tgagttaactcatgctaaaaaatgtccaacgtgagtta-ctcacattgaaaaagtcgagcgtaagttaactcgcgccgcacataattaagggaatgagca 35908264  T
Q  302 attttaaaagggag 315  Q
    ||||| ||||||||    
T  35908263 attttgaaagggag 35908250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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