View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9276-LTR4-TNT-insertion-4 (Length: 411)
Name: F9276-LTR4-TNT-insertion-4
Description: F9276-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9276-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 5462614 - 5462428
Alignment:
| Q |
8 |
caagtgactaccaagaagataggggnnnnnnnggaagagtaaataaataaatgaaaagttgttatagcttttgtttagccaatggtaagtgatgaattgg |
107 |
Q |
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| T |
5462614 |
caagtgactaccaagaagataggggaaaaaaaggaagagtaaataaataaatgaaaagttgttatagcttttgtttagccaatggtaagtgatgaattgg |
5462515 |
T |
|
| Q |
108 |
tgattgaaagttcacaaggattgtggtggtgaagtgaaagatgttacataagtggaacacaatttattattattcctagtgatagtg |
194 |
Q |
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| T |
5462514 |
tgattgaaagttcacaaggattgtggtggtgaagtgaaagatgttacataagtggaacacaatttattattattcctagtgatagtg |
5462428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 258 - 403
Target Start/End: Complemental strand, 5462364 - 5462219
Alignment:
| Q |
258 |
gttgtgactagaaatattgaatagttgaatactactacttgcacttgggataccttgctttctatgaattgagacagggttgcattgcattgagaatggg |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5462364 |
gttgtgactagaaatattgaatagttgaatactactacttgcacttgggataccttgctttctatgaattgagacagggttgcattgcattgagaatggg |
5462265 |
T |
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| Q |
358 |
aaaatggttttgtgtgatttgatgggtatgtgtaagtaacaattgg |
403 |
Q |
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| T |
5462264 |
aaaatggttttgtgtgatttgatgggtatgtgtaagtaacaattgg |
5462219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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