View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9276-LTR4-TNT-insertion-5 (Length: 490)
Name: F9276-LTR4-TNT-insertion-5
Description: F9276-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9276-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 10 - 480
Target Start/End: Complemental strand, 42741976 - 42741506
Alignment:
| Q |
10 |
catatccaagcacccgtagaatttctagtttcagtgaaccctaggagactaaatttcaagaaaaagggtgaaaaaagagagttcaaggttacattaacct |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42741976 |
catatccaagcacccgtagaatttctagtttcagtgaaccctaggagactaaatttcaagaaaaagggtgaaaaaagagagttcaaggttacattaacct |
42741877 |
T |
|
| Q |
110 |
tgaagaaaggaactacgtataagactgattacgtctttggaaaattggtttggaccgatgggaaacatcaagttgggattcctatttcaataaagtatcc |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42741876 |
tgaagaaaggaactacgtataagactgattacgtctttggaaaattggtttggaccgatgggaaacatcaagttgggattcctatttcaataaagtatcc |
42741777 |
T |
|
| Q |
210 |
acattagtgagatttaggttgttgttgcattttgctaccacctgtttaaagtggtgtctcactttttctccctggtttcaataacaagacatgttgtatt |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42741776 |
acattagtgagatttaggttgttgttgcattttgctaccacctgtttaaagtggtgtctcactttttctccctggtttcaataacaagacatgttgtatt |
42741677 |
T |
|
| Q |
310 |
atgtacaagttcttcaaaggttgtgaagtgaatatatcaatgttgttttaatggtaatttatggtgagtgaaatcaaatgaataagataaaatagtatga |
409 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42741676 |
atgtacaagttcttcaaaggttgtgaagtgaatatatcaatgttgttttaatggtaatttatggtgagtgaaatcaaatgaataagataaaatagtatga |
42741577 |
T |
|
| Q |
410 |
tgagtcgttatgtttcatgattaaaaataatatttagatacctacatacaatatattcctataacatatta |
480 |
Q |
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| T |
42741576 |
tgagtcgttatgtttcatgattaaaaataatatttagatacctacatacaatatattcctataacatatta |
42741506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 12 - 401
Target Start/End: Complemental strand, 42760795 - 42760404
Alignment:
| Q |
12 |
tatccaagcacccgtagaatttctagtttcagtgaaccctaggagactaaatttcaagaaaaagggtgaaaaaagagagttcaaggttacattaaccttg |
111 |
Q |
| |
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|||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42760795 |
tatccaagcacccgcagaacttctagtttcagtgaaccctaggagactaaacttcaagaaaaagggtgaaaaaagagagttcaaggttacattaaccttg |
42760696 |
T |
|
| Q |
112 |
aagaaaggaactacgtataagactgattacgtctttggaaaattggtttggaccgatgggaaacatcaagttgggattcctatttcaataaagtatccac |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||| ||||||||||||||| |
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| T |
42760695 |
aagaaaggaactacgtataagactgattacgtctttggaaaattggtttggaacgatggaaaacatcaagttgggactcctattgcaataaagtatccac |
42760596 |
T |
|
| Q |
212 |
attagtg----agatttaggttgttgttgcattttgctaccacctgtttaaagtggtgtctcactttttctccctggtttcaataacaagacatgttgta |
307 |
Q |
| |
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||||||| ||||||||| || |||||||| |||| | ||||||| ||||| |||||||||| | ||||||||| |||||||||| |
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| T |
42760595 |
attagtggtatttatttaggttactgctgcatttt-ctacaaattgtttaagacagtgtcaatatttttctccc-gttttcaataaagggacatgttgtg |
42760498 |
T |
|
| Q |
308 |
ttatgtacaagttcttcaaaggttgtgaagtgaatatatcaatgttgttttaatggtaatttatggtgagtgaaatcaaatgaataagataaaa |
401 |
Q |
| |
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|| |||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||| ||| || ||||||||||||||||||||| |
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| T |
42760497 |
ttgtgtacaagttcttcaaagtttgtgaagtgaatatttcaatgttgtttgaatggtaatttatgatgaatggaatcaaatgaataagataaaa |
42760404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 10 - 401
Target Start/End: Complemental strand, 42751335 - 42750940
Alignment:
| Q |
10 |
catatccaagcacccgtagaatttctagtttcagtgaaccctaggagactaaatttcaagaaaaagggtgaaaaaagagagttcaaggttacattaacct |
109 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42751335 |
catatccaagcacccgcagaatttctagtttcagtggagcctaggagactaaattttaagaaaaagggtgaaaaaagagagttcaaggttacattaacct |
42751236 |
T |
|
| Q |
110 |
tgaagaaaggaactacgtataagactgattacgtctttggaaaattggtttggaccgatgggaaacatcaagttgggattcctatttcaataaagtatcc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||| |
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| T |
42751235 |
tgaagaaaggaactacgtataagactgattacgtctttggaaaattggtttggaccgatggaaaacatcaagttgggactcctattgcaataaagtatcc |
42751136 |
T |
|
| Q |
210 |
acattagtg----agatttaggttgttgttgcattttgctaccacctgtttaaagtggtgtctcactttttctccctggtttcaataacaagacatgttg |
305 |
Q |
| |
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||||||||| ||||||||| || |||||||| |||| | ||||||| ||||| |||||||||| | ||||||||| |||||||| |
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| T |
42751135 |
acattagtggtatttatttaggttactgctgcatttt-ctacaaattgtttaagacagtgtcaatatttttctccc-gttttcaataaagggacatgttt |
42751038 |
T |
|
| Q |
306 |
tattatgtacaagttcttcaaaggttgtgaagtgaatatatcaatgttgttttaatggtaatttatggtgagtgaaatcaa--atgaataagataaaa |
401 |
Q |
| |
|
| || ||||||||||||| |||| ||||||||||||||| |||||||||||| |||||||||||||| ||| || |||||| ||||||||||||||| |
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| T |
42751037 |
tgttgtgtacaagttctttaaagtttgtgaagtgaatatttcaatgttgtttgaatggtaatttatgatgaatggaatcaaatatgaataagataaaa |
42750940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 243
Target Start/End: Original strand, 42736719 - 42736947
Alignment:
| Q |
14 |
tccaagcacccgtagaatttctagtttcagtgaaccctaggagactaaatttcaagaaaaagggtgaaaaaagagagttcaaggttacattaaccttgaa |
113 |
Q |
| |
|
||||||||||| |||||||||| ||||||| | ||||||||||| || || | | ||||||||||||||| ||||||||||||||||| || |||| |
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| T |
42736719 |
tccaagcacccccagaatttctaatttcagttgagcctaggagactgaaatttaggcaaaagggtgaaaaaattgagttcaaggttacatttactttgag |
42736818 |
T |
|
| Q |
114 |
gaaaggaactacgtata-agactgattacgtctttggaaaattggtttggaccgatgggaaacatcaagttgggattcctatttcaataaagtatccaca |
212 |
Q |
| |
|
| | ||||| ||||| ||| ||||||||||| || | ||||||||||| ||||| |||||| || | | ||||||| ||||||| ||| |||| |
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| T |
42736819 |
gccacaaactaagtatataga-agattacgtcttcgggaggttggtttggactgatggaaaacatagtgtagaaactcctattgcaataaa-tattcaca |
42736916 |
T |
|
| Q |
213 |
ttagtgagatttaggttgttgttgcattttg |
243 |
Q |
| |
|
||||| || ||||||||| || ||||||||| |
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|
| T |
42736917 |
ttagtaaggtttaggttgatgctgcattttg |
42736947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 401
Target Start/End: Original strand, 23042523 - 23042916
Alignment:
| Q |
10 |
catatccaagcacccgtagaatttctagtttcagtgaaccctaggagactaaatttcaagaaaaagggtgaaaaaagagagttcaaggttacattaacct |
109 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||| |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
23042523 |
catatccaagcacccacaggatttctagtttcagtgaagcctaacagactaaattttaagaaaaatggtgaaaaaagagagttcaaggttacattaacct |
23042622 |
T |
|
| Q |
110 |
tgaagaaaggaactacgtataagactgattacgtctttggaaaattggtttggaccgatgggaaacatcaagttgggattcctatttcaataaagtatcc |
209 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| || ||||||| ||||||||||||| |
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|
| T |
23042623 |
tgaagaaaggaactacatataagactgattacgtctttggaaaattgatttggaccgatggaaaacatcaagttgcgactcctattgcaataaagtatcc |
23042722 |
T |
|
| Q |
210 |
acattagtg----agatttaggttgttgttgcattttgctaccacctgtttaaagtggtgtctcactttttctccctggtttcaataacaagacatgttg |
305 |
Q |
| |
|
||||||||| ||||||||| || |||||||| |||||| |||||||| ||||| |||||||||| ||||||||| ||||||||| |
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|
| T |
23042723 |
acattagtggtatttatttaggttactgctgcatttt-ctaccaactgtttaagacagtgtcaatatttttctccc-attttcaataaagggacatgttg |
23042820 |
T |
|
| Q |
306 |
tattatgtacaagttcttcaaaggttgtgaagtgaatatatcaatgttgttttaatggtaatttatggtgagtgaaatcaaatgaataagataaaa |
401 |
Q |
| |
|
| || |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||||| |
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|
| T |
23042821 |
tgttgtgtacaagttcttcaaagtttgtgaagtgaatatatcaatgttgtttgaatggtaatttatgatgaattgaatcaaatgaataagataaaa |
23042916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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