View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9281-LTR4-TNT-insertion-1 (Length: 189)
Name: F9281-LTR4-TNT-insertion-1
Description: F9281-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9281-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 9 - 180
Target Start/End: Complemental strand, 39815886 - 39815715
Alignment:
| Q |
9 |
ggagtgagtaacataatgagtcacataacgtggagaaaagcataggatatggcacgccacgtgtgtagagtaatgctcaagttcacacgggtttagctga |
108 |
Q |
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| T |
39815886 |
ggagtgagtaacataatgagtcacataacgtggagaaaagcataggatatggcacgccacgtgtgtagagtaatgctcaagttcacacgggtttagctga |
39815787 |
T |
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| Q |
109 |
ataacgtcaagcatggtacaatctttttaggtctagatcgtatctaataggacttaggctctgaaacaattg |
180 |
Q |
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| T |
39815786 |
ataacgtcaagcatggtacaatctttttaggtctagatcgtatctaataggacttaggctctgaaacaattg |
39815715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 39813245 - 39813161
Alignment:
| Q |
13 |
tgagtaacataatgagtcacataacgtggagaaaagcataggatatggcacgccacgtgtgtagagtaatgctcaagttcacacg |
97 |
Q |
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| T |
39813245 |
tgagtaacataacgagtcgtataacatggagaaaaacaaaggatatgacatgtcacgtgtgtagagtaacgctcaagttcgcacg |
39813161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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