View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9282-LTR4-TNT-insertion-1 (Length: 504)
Name: F9282-LTR4-TNT-insertion-1
Description: F9282-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9282-LTR4-TNT-insertion-1 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 10 - 494
Target Start/End: Complemental strand, 47328811 - 47328327
Alignment:
| Q |
10 |
aggcatggagatcatattgccaaggtcttacnnnnnnnnnggtggcaaacatccataagagtaacatcacaccaaactttgcgatcatagagatcatata |
109 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47328811 |
aggcatggagatcatattgccaaggtcttacaaaaaaaaaggtggcaaacatccataagagtaacatcacaccaaactttgcgatcatagagatcatata |
47328712 |
T |
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| Q |
110 |
gcttttgtcgatggaaaagatacaagccaattttgagatactattactccattccctttgttgttgacccgttgtagcccttatgaatgtgggtggtcca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47328711 |
gcttttgtcgatggaaaagatacaagccaattttgagatactattactccattccctttgttgttgacccgttgtagcccttatgaatgtgggtggtcca |
47328612 |
T |
|
| Q |
210 |
actttaatttctctactatatagtttgacacaacatttttacaactttccactaacgatgattacatcacaaaaaccttgcctttgcaaagtgtagcgag |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47328611 |
actttaatttctctactatatagtttgacacaacatttttacaactttccactaacgatgattacatcacaaaaaccttgcctttgcaaagtgtagcgag |
47328512 |
T |
|
| Q |
310 |
tgtggaagatatcgtgtcttaacgatggttcttctttgatagattgttgagcgtaagctacttctaactaccaatgattcaccatagttcgtaggaacgt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47328511 |
tgtggaagatatcgtgtcttaacgatggttcttctttgatagattgttgagcgtaagctacttctaactaccaatgattcaccatagttcgtaggaacgt |
47328412 |
T |
|
| Q |
410 |
aatcgttaacataaattggttcttccatttcatcttcttcttctttaacaaaaatataggggatatatgatcaccttgccaaatt |
494 |
Q |
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| T |
47328411 |
aatcgttaacataaattggttcttccatttcatcttcttcttctttaacaaaaatataggggatatatgatcaccttgccaaatt |
47328327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 391
Target Start/End: Original strand, 2408504 - 2408635
Alignment:
| Q |
256 |
ttccactaacgatgattacatcacaaaaaccttgcctttgcaaagtgtagcgagtgtggaagatatcgtgtcttaacgatggttcttctttgatagattg |
355 |
Q |
| |
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|||||||| | ||||| |||||||||| | ||||||| || | ||| |||||||||||||||||| |||||||| | ||||||||||||||| |||| |
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| T |
2408504 |
ttccactatcaatgatgacatcacaaa--ctttgcctt-gcgaggtgcagcgagtgtggaagatattgtgtcttagccatggttcttctttga-ctattg |
2408599 |
T |
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| Q |
356 |
ttgagcgtaagctacttctaactaccaatgattcac |
391 |
Q |
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| | | ||||||| ||||||||||| | |||||||| |
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| T |
2408600 |
tggtgtgtaagcttcttctaactactagtgattcac |
2408635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 208 - 392
Target Start/End: Complemental strand, 37212943 - 37212764
Alignment:
| Q |
208 |
caactttaatttctctactatatagtttgacacaacatttttacaactttccactaacgatgattacatcacaaaaaccttgcctttgcaaagtgtagcg |
307 |
Q |
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|||||| ||||| || || |||||||| || |||||||| | ||| ||| |||||| | ||||| |||||||||| | ||||||| || | ||| |||| |
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| T |
37212943 |
caacttcaatttttccaccatatagttggatacaacattctcacagctt-ccactatcaatgatgacatcacaaa--ctttgcctt-gcgaggtgcagcg |
37212848 |
T |
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| Q |
308 |
agtgtggaagatatcgtgtcttaacgatggttcttctttgatagattgttgagcgtaagctacttctaactaccaatgattcacc |
392 |
Q |
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| T |
37212847 |
agtgtggaagatattgtgtcttagccatggttcttctttgactg-ttgtggtgtgtaagcttcttctaactaccagtgattcacc |
37212764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 306 - 392
Target Start/End: Complemental strand, 45163720 - 45163635
Alignment:
| Q |
306 |
cgagtgtggaagatatcgtgtcttaacgatggttcttctttgatagattgttgagcgtaagctacttctaactaccaatgattcacc |
392 |
Q |
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| T |
45163720 |
cgagtgtggaagatattgtgtcttagccatggttcttctttgactg-ttgtggtgtgtaagcttcttctaactaccagtgattcacc |
45163635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 208 - 392
Target Start/End: Complemental strand, 89981 - 89802
Alignment:
| Q |
208 |
caactttaatttctctactatatagtttgacacaacatttttacaactttccactaacgatgattacatcacaaaaaccttgcctttgcaaagtgtagcg |
307 |
Q |
| |
|
|||||| ||||| || || |||||||| || |||||||| | ||| ||| |||||| | ||||| |||||||||| | ||||||| || | ||| | || |
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| T |
89981 |
caacttcaatttttccaccatatagttggatacaacattctcacagctt-ccactatcaatgatgacatcacaaa--ctttgcctt-gcgaggtgcatcg |
89886 |
T |
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| Q |
308 |
agtgtggaagatatcgtgtcttaacgatggttcttctttgatagattgttgagcgtaagctacttctaactaccaatgattcacc |
392 |
Q |
| |
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|||||||||||||| |||||||| | ||||||||||||||| | |||| | | | ||||| ||||||||||||| ||||||||| |
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| T |
89885 |
agtgtggaagatattgtgtcttagccatggttcttctttgactg-ttgtggtgtggaagcttcttctaactaccagtgattcacc |
89802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 304 - 393
Target Start/End: Complemental strand, 3053790 - 3053702
Alignment:
| Q |
304 |
agcgagtgtggaagatatcgtgtcttaacgatggttcttctttgatagattgttgagcgtaagctacttctaactaccaatgattcacca |
393 |
Q |
| |
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|||||||||||||||||| |||||||| | ||||||||||||||| | |||| | | ||||||| |||||||||| | |||||||||| |
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| T |
3053790 |
agcgagtgtggaagatattgtgtcttagccatggttcttctttgactg-ttgtggtgtgtaagcttcttctaactattagtgattcacca |
3053702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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