View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: F9282-LTR4-TNT-insertion-2 (Length: 484)
Name: F9282-LTR4-TNT-insertion-2
Description: F9282-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] F9282-LTR4-TNT-insertion-2
Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 132 - 474
Target Start/End: Complemental strand, 26779857 - 26779515
Alignment:
Q
132
caattgctccaacatccagattttgcatgtccatggaggtaatgatacagtttatgattacatgtattggattagtatgaatattatagactttgatata
231
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
26779857
caattgctccaacatccagattttgcatgtccatggaggtaatgatacagtttatgattacatgtattggattagtatgaatattatagactttgatata
26779758
T
Q
232
acgttttcagcgtggttacctaattgttgtgactttatagttgattctgtgtatgcaaggaatcttttatatcatcacatatgctttgtttgttatgaag
331
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
T
26779757
acgttttcagcgtggttacctaattgttgtgactttatagttgattctgtgtatgcaaggaatcttttatatcattacatatgctttgtttgttatgaag
26779658
T
Q
332
attttgaaatccaacatgactaatataaattagtgcaaaaaagccttgaatccctttgctaatttgggacatacatcatctatgacagtgctccttatgt
431
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
26779657
attttgaaatccaacatgactaatataaattagtgcaaaaaagccttgaatccctttgctaatttgggacatacatcatctatgacagtgctccttatgt
26779558
T
Q
432
attgtctatttttgttttgcatgtgacaaacaaaaatatatta
474
Q
|||||||||||||||||||||||||||||||||||||||||||
T
26779557
attgtctatttttgttttgcatgtgacaaacaaaaatatatta
26779515
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 132 - 474
Target Start/End: Complemental strand, 26781882 - 26781540
Alignment:
Q
132
caattgctccaacatccagattttgcatgtccatggaggtaatgatacagtttatgattacatgtattggattagtatgaatattatagactttgatata
231
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
26781882
caattgctccaacatccagattttgcatgtccatggaggtaatgatacagtttatgattacatgtattggattagtatgaatattatagactttgatata
26781783
T
Q
232
acgttttcagcgtggttacctaattgttgtgactttatagttgattctgtgtatgcaaggaatcttttatatcatcacatatgctttgtttgttatgaag
331
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
T
26781782
acgttttcagcgtggttacctaattgttgtgactttatagttgattctgtgtatgcaaggaatcttttatatcattacatatgctttgtttgttatgaag
26781683
T
Q
332
attttgaaatccaacatgactaatataaattagtgcaaaaaagccttgaatccctttgctaatttgggacatacatcatctatgacagtgctccttatgt
431
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
26781682
attttgaaatccaacatgactaatataaattagtgcaaaaaagccttgaatccctttgctaatttgggacatacatcatctatgacagtgctccttatgt
26781583
T
Q
432
attgtctatttttgttttgcatgtgacaaacaaaaatatatta
474
Q
|||||||||||||||||||||||||||||||||||||||||||
T
26781582
attgtctatttttgttttgcatgtgacaaacaaaaatatatta
26781540
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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