View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9285J-LTR4-TNT-insertion-11 (Length: 646)
Name: F9285J-LTR4-TNT-insertion-11
Description: F9285J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9285J-LTR4-TNT-insertion-11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 628; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 7 - 634
Target Start/End: Complemental strand, 10818866 - 10818239
Alignment:
| Q |
7 |
aattttcatgtgcttctttttgcatggtaagagcttggtttaaggctaattgaacaagcatttccctgaattcaattctatgtttgattttgaaatgatt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10818866 |
aattttcatgtgcttctttttgcatggtaagagcttggtttaaggctaattgaacaagcatttccctgaattcaattctatgtttgattttgaaatgatt |
10818767 |
T |
|
| Q |
107 |
gttcatttgtgttgtgtagtgtttgcatggcttaggatgtggtgttaaattgcaccaccaatctatgttgcttgaggaaggtccttttcttgatgagact |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10818766 |
gttcatttgtgttgtgtagtgtttgcatggcttaggatgtggtgttaaattgcaccaccaatctatgttgcttgaggaaggtccttttcttgatgagact |
10818667 |
T |
|
| Q |
207 |
attgagaaaatggaagataagaaaaagagcacgaaccatgtttttccaatgattgccataattcaattgtagaataattgaagagtttaaaaatgaaata |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10818666 |
attgagaaaatggaagataagaaaaagagcacgaaccatgtttttccaatgattgccataattcaattgtagaataattgaagagtttaaaaatgaaata |
10818567 |
T |
|
| Q |
307 |
agagtttgtgttgcatatacaaatgtgagtatagactatagattatgtttttgttcacttgtttttggttttgacttatgagaattaagctatatgtgca |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10818566 |
agagtttgtgttgcatatacaaatgtgagtatagactatagattatgtttttgttcacttgtttttggttttgacttatgagaattaagctatatgtgca |
10818467 |
T |
|
| Q |
407 |
tatatacttaaatttttgtaggtggagtgtgaagtgtgaaaacgtgtggaatgaattgcaagtacaagaaagggttaattgaatatagaaataaaatcta |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10818466 |
tatatacttaaatttttgtaggtggagtgtgaagtgtgaaaacgtgtggaatgaattgcaagtacaagaaagggttaattgaatatagaaataaaatcta |
10818367 |
T |
|
| Q |
507 |
ttagaaaaaatggtattacttaataattcagaaagttgaagcctaattacttgttattgcaagaaaaacaagtgtcctaatgtgattcacatagcaacat |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10818366 |
ttagaaaaaatggtattacttaataattcagaaagttgaagcctaattacttgttattgcaagaaaaacaagtgtcctaatgtgattcacatagcaacat |
10818267 |
T |
|
| Q |
607 |
tcataagcttacttataaatgcactaat |
634 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
10818266 |
tcataagcttacttataaatgcactaat |
10818239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 7 - 469
Target Start/End: Original strand, 1608189 - 1608649
Alignment:
| Q |
7 |
aattttcatgtgcttctttttgcatggtaagagcttggtttaaggctaattgaacaagcatttccctgaattcaattctatgtttgattttgaaatgatt |
106 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1608189 |
aattttcttgtgcttctttttgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgatt |
1608288 |
T |
|
| Q |
107 |
gttcatttgtgttgtgtagtgtttgcatggcttaggatgtggtgttaaattgcaccaccaatctatgttgcttgaggaaggtccttttcttgatgagact |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1608289 |
gttcatttgtgttgtgtagtgtttgcatggctttggatgtggtgttaaattgcaccaccaatctatgttgcttgaggaaggtccttttcttgatgaggct |
1608388 |
T |
|
| Q |
207 |
attgagaaaatggaagataagaaaaagagcacgaaccatgtttttccaatgattgccataattcaattgtagaataattgaagagtttaaaaatgaaata |
306 |
Q |
| |
|
||||||||||| || |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1608389 |
attgagaaaattgatgataagaaaaagagcataaacaatgtttttccaatgattgccataattcaattgtagaataattgaagagtttaaaaa-ataata |
1608487 |
T |
|
| Q |
307 |
agagtttgtgttgcatat-acaaatgtgagtatagactatagattatgtttttgttcacttgtttttggttttgacttatgagaat-------taagcta |
398 |
Q |
| |
|
||||||| |||||||||| ||||||||| | ||| || ||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
1608488 |
agagtttatgttgcatataacaaatgtgtg--------atatatgatgtttttgttcacttgtttttggttttgacttatgagaattaaaccctaaactc |
1608579 |
T |
|
| Q |
399 |
tatgtgcatatatacttaaatttttgtaggtggagtgtgaagtgtgaaaacgtgtggaatgaattgcaagt |
469 |
Q |
| |
|
||| | |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1608580 |
tatatatatatatacataaatttttgtaggcggagtgtgaag-gtgaaaacgtgtggaatgaattgcaagt |
1608649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 15 - 469
Target Start/End: Original strand, 1631687 - 1632137
Alignment:
| Q |
15 |
tgtgcttctttttgcatggtaagagcttggtttaaggctaattgaacaagcatttccctgaattcaattctatgtttgattttgaaatgattgttcattt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1631687 |
tgtgcttctttttgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcattt |
1631786 |
T |
|
| Q |
115 |
gtgttgtgtagtgtttgcatggcttaggatgtggtgttaaattgcaccaccaatctatgttgcttgaggaaggtccttttcttgatgagactattgagaa |
214 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
1631787 |
gtgttgtgtagtgtttgcatggctttggatgtggtgttaaattgcaccaccaatctatgttgcttgaggaaggtccttttcttgatgaggctgttgagaa |
1631886 |
T |
|
| Q |
215 |
aatggaagataagaaaaagagcacgaaccatgtttttccaatgattgccataattcaattgtagaataattgaagagtttaaaaatgaaataagagtttg |
314 |
Q |
| |
|
||| || |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1631887 |
aattgatgataagaaaaagagcataaacaatgtttttccaatgattgccataattcaattgtagaataattgaagagtttaaaaa-ataataagagttta |
1631985 |
T |
|
| Q |
315 |
tgttgcatat-acaaatgtgagtatagactatagattatgtttttgttcacttgtttttggttttgacttatgagaattaagctata-----tgtgcata |
408 |
Q |
| |
|
|||||||||| ||||||||| | ||| || |||||||||||||||||||||||||||||||||||||||||||| | || | | ||| |
|
|
| T |
1631986 |
tgttgcatataacaaatgtgtg--------atatatgatgtttttgttcacttgtttttggttttgacttatgagaattaaaccctaaactctctatata |
1632077 |
T |
|
| Q |
409 |
tatacttaaatttttgtaggtggagtgtgaagtgtgaaaacgtgtggaatgaattgcaagt |
469 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
1632078 |
tatacataaatttttgtaggcggagtgtgaag-gtgtaaacgtgtggaatgaattgcaagt |
1632137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 401
Target Start/End: Original strand, 1625204 - 1625579
Alignment:
| Q |
15 |
tgtgcttctttttgcatggtaagagcttggtttaaggctaattgaacaagcatttccctgaattcaattctatgtttgattttgaaatgattgttcattt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1625204 |
tgtgcttctttttgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcattt |
1625303 |
T |
|
| Q |
115 |
gtgttgtgtagtgtttgcatggcttaggatgtggtgttaaattgcaccaccaatctatgttgcttgaggaaggtccttttcttgatgagactattgagaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| ||||| |
|
|
| T |
1625304 |
gtgttgtgtagtgtttgcatggcttaggatgtggtgttaaattgcaccaccaatctattttgctcgaggaaggtccttttcttgatgaggctatggagaa |
1625403 |
T |
|
| Q |
215 |
aatggaagataagaaaaagagcacgaaccatgtttttccaatgattgccataattcaattgtagaataattgaagagtttaaaaatgaaat-aagagttt |
313 |
Q |
| |
|
||| ||||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
1625404 |
aattgaagatacgaaaacgagcataaataatgtttttccaatgattgccataattcaattgtagaataattgaagagtt------tgaaataaagagttt |
1625497 |
T |
|
| Q |
314 |
gtgttgcatat-acaaatgtgagtatagactatagattatgtttttgttcacttgtttttggttttgacttatgagaattaagctatat |
401 |
Q |
| |
|
|||||||||| ||||||||| | |||| || ||| ||| ||| |||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
1625498 |
atgttgcatataacaaatgtgtg-------tataaatgatgctttagttgacttgtttttggatttgacttatgagaattaatctatat |
1625579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 471 - 634
Target Start/End: Original strand, 1632180 - 1632349
Alignment:
| Q |
471 |
caagaaagggttaattgaatatagaaataaaatct-----attagaaaaaatggtattacttaataattcagaaagttgaagcctaattacttgttattg |
565 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
1632180 |
caagaaagaattaattgaatataggaataaaatcttctctattagaaaaaatggtattacttaacaattcagaaagttgaagcctaattacttgtcattg |
1632279 |
T |
|
| Q |
566 |
caagaaaaacaagtgtcctaatgt-gattcacatagcaacattcataagcttacttataaatgcactaat |
634 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
1632280 |
caagaaaaacaagtgtcctaatgtggattcacatagcaacattcttaagcttgcttataaatgcactaat |
1632349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 471 - 634
Target Start/End: Original strand, 1608692 - 1608861
Alignment:
| Q |
471 |
caagaaagggttaattgaatatagaaataaaat-----ctattagaaaaaatggtattacttaataattcagaaagttgaagcctaattacttgttattg |
565 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
1608692 |
caagaaagaattaattgaatataggaataaaatattatctattagaaaaaatggtattacttaataatccagaaagttgaagccaaattacttgttattg |
1608791 |
T |
|
| Q |
566 |
caagaaaaacaagtgtcctaatgt-gattcacatagcaacattcataagcttacttataaatgcactaat |
634 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
1608792 |
caagaaaaacaagtgtcttaatgtggattcacatagcaatattcttaagcttacttataaatgcactaat |
1608861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 471 - 634
Target Start/End: Original strand, 1614168 - 1614337
Alignment:
| Q |
471 |
caagaaagggttaattgaatatagaaataaaatct-----attagaaaaaatggtattacttaataattcagaaagttgaagcctaattacttgttattg |
565 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| |||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||| || |
|
|
| T |
1614168 |
caagaaagaattaattgaatataggaataaaatcttatctattagaaaaaatggaattacttaataatccagaaagttgaagccaaattacttgttagtg |
1614267 |
T |
|
| Q |
566 |
caagaaaaacaagtgtcctaatgt-gattcacatagcaacattcataagcttacttataaatgcactaat |
634 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
1614268 |
caagaaaaacaagtgtgctaatgtggattcacatagcaacattcttaagcttacttataaatgtactaat |
1614337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 510 - 634
Target Start/End: Original strand, 1625737 - 1625862
Alignment:
| Q |
510 |
gaaaaaatggtattacttaataattcagaaagttgaagcctaattacttgttattgcaagaaaaacaagtgtcctaatgt-gattcacatagcaacattc |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||| | ||||||||| ||||||| |
|
|
| T |
1625737 |
gaaaaaatggtattacttaataattcagaaagttggagcctaattacttgatattgcaagaaaaacaagtgtcctgatgtagcttcacatagaaacattc |
1625836 |
T |
|
| Q |
609 |
ataagcttacttataaatgcactaat |
634 |
Q |
| |
|
|| |||||||| | |||||| |||| |
|
|
| T |
1625837 |
ttaggcttactttttaatgcattaat |
1625862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 381 - 469
Target Start/End: Original strand, 1614032 - 1614125
Alignment:
| Q |
381 |
cttatgagaattaagcta---tatgtgcatatata--cttaaatttttgtaggtggagtgtgaagtgtgaaaacgtgtggaatgaattgcaagt |
469 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | |||||||||||||| ||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
1614032 |
cttatgagaattaagctactatatgtgcatatatatacataaatttttgtaggcggagtgtgaagggtgaaaacgtttggaatgaattgcaagt |
1614125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 461
Target Start/End: Original strand, 18786145 - 18786594
Alignment:
| Q |
15 |
tgtgcttctttttgcatggtaagagcttggtttaaggctaattgaacaagcatttccctgaattcaattctatgtttgattttgaaatgattgttcattt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
18786145 |
tgtgcttctttttgcatggtaagagcttggtttaaggctaatttaacaagcatttccctgaattcaactctatgtttgattttgaagtgattgttcattt |
18786244 |
T |
|
| Q |
115 |
gtgttgtgtagtgtttgcatggcttaggatgtggtgttaaattgcaccaccaatctatgttgcttgaggaaggtccttttcttgatgagactattgagaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18786245 |
gtgttgtgtagtgtttgcatggcttaggatgtggtgttaaattgcaccaccaatctatgttgcttgaggaaggtccttttcttgatgaggctattgagaa |
18786344 |
T |
|
| Q |
215 |
aatggaagataagaaaaagagcacgaaccatgtttttccaatgattgccataa-ttcaattgtagaataattgaagagtttaaaaatgaaataagagttt |
313 |
Q |
| |
|
||| ||||||||||||||||||| ||| |||||||||||||||||||||||| |||| |||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
18786345 |
aattgaagataagaaaaagagcataaacaatgtttttccaatgattgccataatttcagttgtagaataattgaagattttaaaaa-ataacaagagttt |
18786443 |
T |
|
| Q |
314 |
gtgttgcat-atacaaatgtgagtatagactatagattatgtttttgttcacttg-----tttttggttttgacttatgagaattaagctatatgtgcat |
407 |
Q |
| |
|
|||||||| | ||||||||| | |||||| ||| ||||||| ||||| | |||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
18786444 |
atgttgcataaaacaaatgtgtg-------catagatgatgcttttgttgacttggattatatttggttttgacttataagaaataagctatatgtgcat |
18786536 |
T |
|
| Q |
408 |
a----tatacttaaatttttgtaggtggagtgtgaagtgtgaaaacgtgtggaatgaa |
461 |
Q |
| |
|
| ||||| | | ||||||||||||||||||||| ||||||| |||| |||||| |
|
|
| T |
18786537 |
atatttatacgtgatattttgtaggtggagtgtgaaggttgaaaacatgtgaaatgaa |
18786594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 510 - 589
Target Start/End: Original strand, 18786688 - 18786767
Alignment:
| Q |
510 |
gaaaaaatggtattacttaataattcagaaagttgaagcctaattacttgttattgcaagaaaaacaagtgtcctaatgt |
589 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18786688 |
gaaaaaatagttttacttaataattcagaaagttggagcctaattacttgttattgcaagaaaaacaagtgtcctcatgt |
18786767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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