View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9285J-LTR4-TNT-insertion-12 (Length: 359)
Name: F9285J-LTR4-TNT-insertion-12
Description: F9285J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9285J-LTR4-TNT-insertion-12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 9 - 351
Target Start/End: Complemental strand, 18080667 - 18080325
Alignment:
| Q |
9 |
caactgctccttcaaaaagtggaagcaaattttctacttcttcaattctcatgaagcgccacagatcttccttctcaatgcacctgatgatttcaacggt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18080667 |
caactgctccttcaaaaagtggaagcaaattttctacttcttcaattctcatgaagcgccacagatcttccttctcaatgcacctgatgatttcaacggt |
18080568 |
T |
|
| Q |
109 |
taaacgaaaatatgataagccaattccagaagaatgaatctaaatcacactgcagggaatgtttgcagggcaacaaaatcttacttgcttcctggcttag |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18080567 |
taaacgaaaatatgataagccaattccagaaaaatgaatctaaatcacattgcagggaatgtttgcagggcaacaaaatcttacttgcttcctggcttag |
18080468 |
T |
|
| Q |
209 |
caacattcctgaaaattcgaaacgcagccgccttcgcttcccattcactagtaatttcattatctttgttgtcactcacatcttcatagatgctctctgg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18080467 |
caacattcctgaaaattcgaaacgcagccgccttcgcttcccattcactagtaatttcattatctttgttgtcactcacatcttcatagatgctctctgg |
18080368 |
T |
|
| Q |
309 |
tgtatagctaatggtagacaatccagaactcctgatcacatta |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18080367 |
tgtatagctaatggtagacaatccagaactcctgatcacatta |
18080325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 17 times since January 2019
Visitors: 856