View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9285J-LTR4-TNT-insertion-5 (Length: 123)
Name: F9285J-LTR4-TNT-insertion-5
Description: F9285J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9285J-LTR4-TNT-insertion-5 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 81; Significance: 1e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 1e-38
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 505015 - 504935
Alignment:
| Q |
34 |
gaattccaaaaggaccagcgtattcgggtccaatacgctgttgtatccctgcagatatttctctttctaaccatacaattg |
114 |
Q |
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| T |
505015 |
gaattccaaaaggaccagcgtattcgggtccaatacgctgttgtatccctgcagatatttctctttctaaccatacaattg |
504935 |
T |
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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 421452 - 421484
Alignment:
| Q |
7 |
aattcttacattgtatcagccagtgttgaattc |
39 |
Q |
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| T |
421452 |
aattcttacattgtatcagccagtgttgaattc |
421484 |
T |
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Target: chr7 (Bit Score: 77; Significance: 3e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 3e-36
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 6928947 - 6928867
Alignment:
| Q |
34 |
gaattccaaaaggaccagcgtattcgggtccaatacgctgttgtatccctgcagatatttctctttctaaccatacaattg |
114 |
Q |
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| T |
6928947 |
gaattccaaaaggaccggcgtattcgggtccaatacgctgttgtatccctgcagatatttctctttctaaccatacaattg |
6928867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 3e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 3e-36
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 14541512 - 14541432
Alignment:
| Q |
34 |
gaattccaaaaggaccagcgtattcgggtccaatacgctgttgtatccctgcagatatttctctttctaaccatacaattg |
114 |
Q |
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| T |
14541512 |
gaattccaaaaggactagcgtattcgggtccaatacgctgttgtatccctgcagatatttctctttctaaccatacaattg |
14541432 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 53091850 - 53091930
Alignment:
| Q |
34 |
gaattccaaaaggaccagcgtattcgggtccaatacgctgttgtatccctgcagatatttctctttctaaccatacaattg |
114 |
Q |
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| T |
53091850 |
gaattccaaaaggaccggcgtattcgggtccaatacgatgttgtatccctgcaaatatttctctttctaaccatacaattg |
53091930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 166656 - 166591
Alignment:
| Q |
48 |
ccagcgtattcgggtccaatacgctgttgtatccctgcagatatttctctttctaaccatacaatt |
113 |
Q |
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| T |
166656 |
ccagcatattcaggaccaatacgttgttgtatcgacgcagatatttctctttctaaccacacaatt |
166591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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