View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9285J-LTR4-TNT-insertion-7 (Length: 179)
Name: F9285J-LTR4-TNT-insertion-7
Description: F9285J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9285J-LTR4-TNT-insertion-7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 161; Significance: 4e-86; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 9 - 169
Target Start/End: Complemental strand, 39749385 - 39749225
Alignment:
| Q |
9 |
ttggctgctgatgagaaaaggtctagattagcttggcatttaagtgattgttttcagaaggattctggcagggcttcgtttcctctttgtgactcgaaaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39749385 |
ttggctgctgatgagaaaaggtctagattagcttggcatttaagtgattgttttcagaaggattctggcagggcttcgtttcctctttgtgactcgaaaa |
39749286 |
T |
|
| Q |
109 |
catcaatttcttcatgcctaagaaacttagatgaccttgctcataaagtttaccttgaatt |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39749285 |
catcaatttcttcatgcctaagaaacttagatgaccttgctcataaagtttaccttgaatt |
39749225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 27019741 - 27019901
Alignment:
| Q |
9 |
ttggctgctgatgagaaaaggtctagattagcttggcatttaagtgattgttttcagaaggattctggcagggcttcgtttcctctttgtgactcgaaaa |
108 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||| | ||||||||| |||| ||| ||||||| |||||| | ||| |
|
|
| T |
27019741 |
ttggctgctgatgagaaaaggtcgagattggcttggcatctaagtgattgctttcaaagggattctggaagggtttcctttcctcgctgtgacgcagaaa |
27019840 |
T |
|
| Q |
109 |
catcaatttcttcatgcctaagaaacttagatgaccttgctcataaagtttaccttgaatt |
169 |
Q |
| |
|
|||||||| | ||||||||||||||||||| || ||||||||||| |||||||||||||| |
|
|
| T |
27019841 |
catcaattgcaacatgcctaagaaacttagacgatcttgctcataaggtttaccttgaatt |
27019901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 5e-36
Query Start/End: Original strand, 9 - 169
Target Start/End: Complemental strand, 27088676 - 27088516
Alignment:
| Q |
9 |
ttggctgctgatgagaaaaggtctagattagcttggcatttaagtgattgttttcagaaggattctggcagggcttcgtttcctctttgtgactcgaaaa |
108 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||||||| |||||||||| ||||| | ||||||||| |||| ||| ||||||| ||||||| | ||| |
|
|
| T |
27088676 |
ttggctgctgacgagaaaaggtcgagattggcttggcatctaagtgattgctttcaaagggattctggaagggtttcctttcctcgttgtgacgcagaaa |
27088577 |
T |
|
| Q |
109 |
catcaatttcttcatgcctaagaaacttagatgaccttgctcataaagtttaccttgaatt |
169 |
Q |
| |
|
|| ||||| | ||||||||||||||||||| || ||||||||||| |||||||||||||| |
|
|
| T |
27088576 |
caccaattgcaacatgcctaagaaacttagacgatcttgctcataaggtttaccttgaatt |
27088516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 26978013 - 26978166
Alignment:
| Q |
13 |
ctgctgatgagaaaaggtctagattagcttggcatttaagtgattgttttcagaaggattctggcagggcttcgtttcctctttgtgactcgaaaacatc |
112 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||||||| |||||||||| ||||| | ||||||||| |||| ||| ||||||| ||||||| |||||||||| |
|
|
| T |
26978013 |
ctgcagatgagaaaaggtcgagattggcttggcatctaagtgattgctttcaaagggattctggaagggtttcctttcctcattgtgacacgaaaacatc |
26978112 |
T |
|
| Q |
113 |
aatttcttcatgcctaagaaacttagatgaccttgctcataaagtttaccttga |
166 |
Q |
| |
|
|||| | ||||||| |||||||| || || | |||||||| ||||||||||| |
|
|
| T |
26978113 |
aattgcgacatgccttagaaacttggacgatttcgctcataaggtttaccttga |
26978166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 7e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 7e-60
Query Start/End: Original strand, 9 - 169
Target Start/End: Complemental strand, 1960392 - 1960232
Alignment:
| Q |
9 |
ttggctgctgatgagaaaaggtctagattagcttggcatttaagtgattgttttcagaaggattctggcagggcttcgtttcctctttgtgactcgaaaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| |||| |||| |||| |
|
|
| T |
1960392 |
ttggctgctgatgagaaaaggtctagattagcttggcatttaagtgattgttttcagatggattctggcaggacttcctttcctcattgtaactcaaaaa |
1960293 |
T |
|
| Q |
109 |
catcaatttcttcatgcctaagaaacttagatgaccttgctcataaagtttaccttgaatt |
169 |
Q |
| |
|
|| |||||||| |||| |||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1960292 |
caccaatttctacatgtctaataaacttagatgaccttgctcataaagttaaccttgaatt |
1960232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 6e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 6e-48
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 11631582 - 11631742
Alignment:
| Q |
9 |
ttggctgctgatgagaaaaggtctagattagcttggcatttaagtgattgttttcagaaggattctggcagggcttcgtttcctctttgtgactcgaaaa |
108 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| | ||||||||| |||| ||| ||||||| ||||||||| |||| |
|
|
| T |
11631582 |
ttggctgccgatgagaaaaggtctagattagcttggcatctaagtgattgctttcaaagggattctggaagggattcctttcctcattgtgactcaaaaa |
11631681 |
T |
|
| Q |
109 |
catcaatttcttcatgcctaagaaacttagatgaccttgctcataaagtttaccttgaatt |
169 |
Q |
| |
|
|||||||| | |||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11631682 |
catcaattgcaaaatgcttaagaaacttagatgaccttgctcataaggtttaccttgaatt |
11631742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 2e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 34680410 - 34680566
Alignment:
| Q |
13 |
ctgctgatgagaaaaggtctagattagcttggcatttaagtgattgttttcagaaggattctggcagggcttcgtttcctctttgtgactcgaaaacatc |
112 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||||||| |||||||||| ||||| | ||||||||| |||| ||| ||||||| ||||||| |||||||||| |
|
|
| T |
34680410 |
ctgcggatgagaaaaggtcgagattggcttggcatctaagtgattgctttcaaagggattctggaagggtttcctttcctcattgtgacacgaaaacatc |
34680509 |
T |
|
| Q |
113 |
aatttcttcatgcctaagaaacttagatgaccttgctcataaagtttaccttgaatt |
169 |
Q |
| |
|
|||| ||||||||||||||||||| || ||||||||||| |||||||||||||| |
|
|
| T |
34680510 |
aattgtgacatgcctaagaaacttagacgatcttgctcataaggtttaccttgaatt |
34680566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 20 times since January 2019
Visitors: 856