View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9285J-LTR4-TNT-insertion-8 (Length: 232)
Name: F9285J-LTR4-TNT-insertion-8
Description: F9285J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9285J-LTR4-TNT-insertion-8 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 19706682 - 19706906
Alignment:
| Q |
8 |
tgcctctatttagattcaaatttgaatagagtagatggaaaataagcacacaattttttgttttgcatttctattctattgttcaaaaaagttaattttt |
107 |
Q |
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| T |
19706682 |
tgcctctatttagattcaaatttgaatagagtagatggaaaataagcacacaattttttgttttgcatttctattctattgttcaaaaaagttaattttt |
19706781 |
T |
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| Q |
108 |
aaaagccaacctttcttagtaccaaaccaagagatccccatttatcaannnnnnnnnnnnnnnnnnnnataagttttatatattactcttctacatgggg |
207 |
Q |
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| T |
19706782 |
aaaagccaacctttcttagtaccaaaccaagagatctccatttatcaattttttttttttttttttttataagttttatatattactcttctacatggtg |
19706881 |
T |
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| Q |
208 |
ttaaataattatattttatgtatga |
232 |
Q |
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||||||||||||||||||||||||| |
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| T |
19706882 |
ttaaataattatattttatgtatga |
19706906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 154
Target Start/End: Complemental strand, 23192843 - 23192699
Alignment:
| Q |
10 |
cctctatttagattcaaatttgaatagagtagatggaaaataagcacacaattttttgttttgcatttctattctattgttcaaaaa-agttaattttta |
108 |
Q |
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||||||| |||||||||||||||||||||||| || ||||||||||||||||||| |||||| ||||||||||| |||||| ||||| | ||| ||| |
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| T |
23192843 |
cctctatatagattcaaatttgaatagagtagttgcaaaataagcacacaattttctgtttttcatttctattccattgttaaaaaataaataa-aatta |
23192745 |
T |
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| Q |
109 |
aaagccaacctttcttagtaccaaaccaagagatccccatttatca |
154 |
Q |
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| T |
23192744 |
aaagccaacctttcttagtatcaaaccaagatatctctatttatca |
23192699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 23192648 - 23192602
Alignment:
| Q |
178 |
aagttttatatattactctt-ctacatggggttaaataattatattt |
223 |
Q |
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|||| ||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
23192648 |
aagtattatatattactctttctacatggtgttaaataattatattt |
23192602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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