View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9295-LTR4-TNT-insertion-4 (Length: 790)
Name: F9295-LTR4-TNT-insertion-4
Description: F9295-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9295-LTR4-TNT-insertion-4 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 569; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 198 - 790
Target Start/End: Complemental strand, 12338890 - 12338298
Alignment:
| Q |
198 |
ctctctagctcaaggtgaaaaacatgatgatgcagttgatggctactattggcgagtagaatacatactagaagactagtgttaatgacattcacttaca |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12338890 |
ctctctagctcaaggtgaaaaacatgatgatgcagttgatggctactattggcgagtagaatacatactagaagactagtgttaatgacattcacttaca |
12338791 |
T |
|
| Q |
298 |
cactattttctaacatgtattcttttaatcgaataaaattcatgcgtgtcttaccatcactttatgtgaatctattaaaaatgagtgtgaaagtgatatt |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12338790 |
cactattttctaacatgtattcttttaatcgaataaaattcatgcgtgtcttaccatcactttatgtgaatctattaaaaatgagtgtgaaagtgatatt |
12338691 |
T |
|
| Q |
398 |
actatcactaaaaaaggataaacattgatgcatcatgcatgcatgtgctctgaaatacacacacaaaaaagcaacaaataattaaccaaattaagtgtag |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12338690 |
actatcactaaaaaaggataaacattgatgcatcatgcatgcatgtgctctgaaatacacacacaaaaaagcaacaaataattaaccaaattaagtgtag |
12338591 |
T |
|
| Q |
498 |
tggtccttcctatcaataacannnnnnnnagctctctctcacattaatagtcaatctagctataaggtacgtatttacatgaaggattcaacaagctgtc |
597 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12338590 |
tggtccttcctatcaataacattttttttagctctctctcacattaatagtcaatctagctataaggtacgtatttacatgaaggattcaacaagctgtc |
12338491 |
T |
|
| Q |
598 |
tatttccattgcattcaacttttgggctagcttgattgcgaaaggtcatgtgggaattatgtgtctttgaaaggtatgaactcaacgacctaccctttat |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12338490 |
tatttccattgcattcaacttttgggctagcttgattgcgaaaggtcatgtgggaattatgtgtctttgaaaggtatgaactcaacgacctaccctttat |
12338391 |
T |
|
| Q |
698 |
ttctgtgccaccataactatatttccgggtttgaatttcagaccaggatcatcttttgtaaacacattcttataatacttcattcttatagga |
790 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12338390 |
ttctgtgccaccataactatatttccgggtttgaatttcagaccaggatcatcttttgtaaacacattcttataatacttcattcttatagga |
12338298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 12339079 - 12338938
Alignment:
| Q |
9 |
ttgtcacacaaattgatgtcaaataacactactcataaaaataacatatttttgacatatttactcttacaaatatatttttagtcactcaactttgttg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12339079 |
ttgtcacacaaattgatgtcaaataacactactcataaaaataacatatttttgacatatttactcttacaaatatatttttagtcactcaactttgttg |
12338980 |
T |
|
| Q |
109 |
gagagtcatataaataagagatgaagggagtatctttctccc |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12338979 |
gagagtcatataaataagagatgaagggagtatctttctccc |
12338938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2397 times since January 2019
Visitors: 854