View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9295-LTR4-TNT-insertion-9 (Length: 164)
Name: F9295-LTR4-TNT-insertion-9
Description: F9295-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9295-LTR4-TNT-insertion-9 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 2e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 8 - 154
Target Start/End: Original strand, 6991062 - 6991208
Alignment:
| Q |
8 |
cttctattggtcgcaaccctagtcggacatttgcttaaattattagtctttcatttatttatagtattttcttactcatagtcatagacatgaaataatt |
107 |
Q |
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|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6991062 |
cttctattggtcgcaaccctagttggacatttgcttaaattattagtctttcatttatttatagtattttcttactcatagtcatagacatgaaataatt |
6991161 |
T |
|
| Q |
108 |
aaatctataactaattatgggacatagttgaatacttttattgatta |
154 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6991162 |
aaatctataactaattatgggacatagttgaatacttttattgatta |
6991208 |
T |
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