View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9296-LTR4-TNT-insertion-4 (Length: 308)
Name: F9296-LTR4-TNT-insertion-4
Description: F9296-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9296-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 300
Target Start/End: Original strand, 30896456 - 30896746
Alignment:
| Q |
10 |
caaaagcgcgggttccagcaccattcataaaacaaacatgttgcaatcttcaatccttcttacaactcattgaatctattgaatctgaatttttaccctt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30896456 |
caaaagcgcgggttccagcaccattcataaaacaaacatgttgcaatcttcaatccttcttacaactcattgaatctattgaatctgaatttttaccctt |
30896555 |
T |
|
| Q |
110 |
ctcttcaaaatccttttgtagtaagcgaccatttctctttctacttctattaggggaaacactttgacataaaaaagagaaaattggaataaccgatacc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30896556 |
ctcttcaaaatccttttgtagtaagcgaccatttctctttctacttctattaggggaaacactttgacataaaaaagagaaaattggaataaccgatacc |
30896655 |
T |
|
| Q |
210 |
atttaatacaagtgacatacaaatatatattaaataaaatcaactaaaatgtagcattcatttccaaatcttgttgaaaatcttggcatta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30896656 |
atttaatacaagtgacatacaaatatatattaaataaaatcaactaaaatgtagcattcatttccaaatcttgttgaaaattttggcatta |
30896746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 17778770 - 17778716
Alignment:
| Q |
10 |
caaaagcgcgggttccagcaccattcataaaacaaacatgttgcaatcttcaatc |
64 |
Q |
| |
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|||||| ||||||||||| |||||| | ||||||||||||||||||| ||||||| |
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|
| T |
17778770 |
caaaagggcgggttccaggaccatttagaaaacaaacatgttgcaattttcaatc |
17778716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 6945241 - 6945293
Alignment:
| Q |
10 |
caaaagcgcgggttccagcaccattcataaaacaaacatgttgcaatcttcaa |
62 |
Q |
| |
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|||||||| |||||||| ||||| || ||||||||||| |||||||| ||||| |
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|
| T |
6945241 |
caaaagcgagggttccatcaccactcgtaaaacaaacaagttgcaatgttcaa |
6945293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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