View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: F9296-LTR4-TNT-insertion-4 (Length: 308)
Name: F9296-LTR4-TNT-insertion-4
Description: F9296-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] F9296-LTR4-TNT-insertion-4
Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 300
Target Start/End: Original strand, 30896456 - 30896746
Alignment:
Q
10
caaaagcgcgggttccagcaccattcataaaacaaacatgttgcaatcttcaatccttcttacaactcattgaatctattgaatctgaatttttaccctt
109
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
30896456
caaaagcgcgggttccagcaccattcataaaacaaacatgttgcaatcttcaatccttcttacaactcattgaatctattgaatctgaatttttaccctt
30896555
T
Q
110
ctcttcaaaatccttttgtagtaagcgaccatttctctttctacttctattaggggaaacactttgacataaaaaagagaaaattggaataaccgatacc
209
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
30896556
ctcttcaaaatccttttgtagtaagcgaccatttctctttctacttctattaggggaaacactttgacataaaaaagagaaaattggaataaccgatacc
30896655
T
Q
210
atttaatacaagtgacatacaaatatatattaaataaaatcaactaaaatgtagcattcatttccaaatcttgttgaaaatcttggcatta
300
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
T
30896656
atttaatacaagtgacatacaaatatatattaaataaaatcaactaaaatgtagcattcatttccaaatcttgttgaaaattttggcatta
30896746
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 17778770 - 17778716
Alignment:
Q
10
caaaagcgcgggttccagcaccattcataaaacaaacatgttgcaatcttcaatc
64
Q
|||||| ||||||||||| |||||| | ||||||||||||||||||| |||||||
T
17778770
caaaagggcgggttccaggaccatttagaaaacaaacatgttgcaattttcaatc
17778716
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 6945241 - 6945293
Alignment:
Q
10
caaaagcgcgggttccagcaccattcataaaacaaacatgttgcaatcttcaa
62
Q
|||||||| |||||||| ||||| || ||||||||||| |||||||| |||||
T
6945241
caaaagcgagggttccatcaccactcgtaaaacaaacaagttgcaatgttcaa
6945293
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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