View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9296-LTR4-TNT-insertion-7 (Length: 667)
Name: F9296-LTR4-TNT-insertion-7
Description: F9296-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9296-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 497; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 162 - 658
Target Start/End: Complemental strand, 25722541 - 25722045
Alignment:
| Q |
162 |
ggtctcatgtttatttttctataaaattaagaagtttcattcttcgatgccataagaaaaatcacacgttttactctcacaaatttatcacgcaagtaat |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25722541 |
ggtctcatgtttatttttctataaaattaagaagtttcattcttcgatgccataagaaaaatcacacgttttactctcacaaatttatcacgcaagtaat |
25722442 |
T |
|
| Q |
262 |
ttcagtccttgtgtagacatattgagacaaaacatgtttgattaacattcaactaatttgatgattctgatacattaaaaacttagaaaaagtttctaca |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25722441 |
ttcagtccttgtgtagacatattgagacaaaacatgtttgattaacattcaactaatttgatgattctgatacattaaaaacttagaaaaagtttctaca |
25722342 |
T |
|
| Q |
362 |
caaagccaacttcaaccgacatctaggggtggataaaaagtcaaaaattgagtcaaactgctgaatcgaactgctattgaaccaaactgttatgcaaaac |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25722341 |
caaagccaacttcaaccgacatctaggggtggataaaaagtcaaaaattgagtcaaactgctgaatcgaactgctattgaaccaaactgttatgcaaaac |
25722242 |
T |
|
| Q |
462 |
ttatgaactgatccatacttaaaggagcagttattaaccgaacctttttcataaaaaaccataactaaacttgaacccaaattaaactaaaaacgttgat |
561 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25722241 |
ttatgaactgatccatacttaaaggagcagttattaaccgaacctttttcataaaaaaccataactaaacttgaacccaaattaaactaaaaacgttgat |
25722142 |
T |
|
| Q |
562 |
ttgttcattgtgtttgctcttctgagttctttaactgtgtttgctagtttgtttgccaaattaaaccaaaattttctgagtttcatcttcacaattg |
658 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25722141 |
ttgttcattgtgtttgctcttctgagttctttaactgtgtttgctagtttgtttgccaaattaaaccaaaattttctgagtttcatcttcacaattg |
25722045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 25722695 - 25722631
Alignment:
| Q |
8 |
caagaaataatgaaaataattattttatcgtagtcattgtttccaaaatgcaaaacatggatgac |
72 |
Q |
| |
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| T |
25722695 |
caagaaataatgaaaataattattttatcgtagtcattgtttccaaaatgcaaaacatggatgac |
25722631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 422 - 533
Target Start/End: Original strand, 24004017 - 24004128
Alignment:
| Q |
422 |
ctgaatcgaactgctattgaaccaaactgttatgcaaaacttatgaactgatccatacttaaaggagcagttattaaccgaacctttttcataaaaaacc |
521 |
Q |
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||||| |||| || ||||||||| ||| | ||| |||| || ||||| |||||||| ||||| || |||||||||||||||||||||| |||||||| |
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| T |
24004017 |
ctgaaccgaattgatattgaaccgaaccggcatgtaaaagttttgaaccgatccatatttaaacgaccagttattaaccgaaccttttttgaaaaaaacc |
24004116 |
T |
|
| Q |
522 |
ataactaaactt |
533 |
Q |
| |
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| |||| ||||| |
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| T |
24004117 |
aaaactgaactt |
24004128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 429 - 604
Target Start/End: Original strand, 34648867 - 34649036
Alignment:
| Q |
429 |
gaactgctattgaaccaaactgttatgcaaaacttatgaactgatccatacttaaaggagcagttattaaccgaac-----ctttttcataaaaaac-ca |
522 |
Q |
| |
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||||||||||||||| |||| |||| |||| ||| |||||||||||||||||||| ||||||||||||| |||| |||||| |||||||| || |
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| T |
34648867 |
gaactgctattgaacagaactactatgtaaaaattacgaactgatccatacttaaag-agcagttattaactgaactgaacctttttgataaaaaaatca |
34648965 |
T |
|
| Q |
523 |
taactaaacttgaacccaaattaaactaaaaacgttgatttgttcattgtgtttgctcttctgagttctttaactgtgtttg |
604 |
Q |
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||||||||||||||| | ||||||||||||||||| ||||||| || | |||||||||| |||||||||| |
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| T |
34648966 |
aaactaaacttgaacc-----------agaaacgttgatttgttcactgtgtttcctttgttgagttcttttactgtgtttg |
34649036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 595 - 634
Target Start/End: Original strand, 34649052 - 34649091
Alignment:
| Q |
595 |
actgtgtttgctagtttgtttgccaaattaaaccaaaatt |
634 |
Q |
| |
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||||| ||||||||||||||||||||||| |||||||||| |
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| T |
34649052 |
actgtctttgctagtttgtttgccaaattgaaccaaaatt |
34649091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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