View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9296-LTR4-TNT-insertion-9 (Length: 142)
Name: F9296-LTR4-TNT-insertion-9
Description: F9296-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9296-LTR4-TNT-insertion-9 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 4e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 4e-64
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 41096466 - 41096589
Alignment:
| Q |
10 |
aactgccaaacttgatgttaacagatgataacatgtaagggagccttgaattggaagtagtgttccactatattatcatgatataactaactcagctcaa |
109 |
Q |
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| T |
41096466 |
aactgccaaacttgatgttaacagatgataacatgtaagggagccttgaattggaagtagtgttccactatattatcatgatataactaactcagctcaa |
41096565 |
T |
|
| Q |
110 |
ctagtaagaaatctgagacaattg |
133 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
41096566 |
ctagtaagaaatctgagacaattg |
41096589 |
T |
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