View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9301-LTR4-TNT-insertion-3 (Length: 642)
Name: F9301-LTR4-TNT-insertion-3
Description: F9301-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9301-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 11 - 632
Target Start/End: Original strand, 2949314 - 2949934
Alignment:
| Q |
11 |
gaaattctagaaccacttgaagaaaataatataaatttgtgatttcaaatagtttttcgtgaagttggttgttaaaagagctgtactagtagttggagat |
110 |
Q |
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| T |
2949314 |
gaaattctagaaccacttgaagaaaataatataaatttgtgatttcaaatagtttttcgtgaagttggttgttaaaagagctgtactagtagttggagat |
2949413 |
T |
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| Q |
111 |
agaatagaataattgaaattatatatctgtctataataaaacactcaatatgttttgttaactgcatacatatatcatatgacatgatgtgttcaattgg |
210 |
Q |
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| T |
2949414 |
agaatagaataattgaaattatatatctgtctataataaaacactcaatatgttttgttaactgcatacatatatcatatgacatgatgtgttcaattgc |
2949513 |
T |
|
| Q |
211 |
tacgcagtgcatgatatgtctcttaattacttgggatgcttcctcttctgcacgtcttctttcttcaaggagacattattannnnnnncattatccttat |
310 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2949514 |
ta-gccttgcatgatatgtctcttaattacttgggatgcttcctcttctgcacgtcttctttcttcaaggagacattattatttttttcattatccttat |
2949612 |
T |
|
| Q |
311 |
tatggtaaagagtccctataatacaaaagtaagcaggtgtatatgccagtttttaaggagatttttcctagatttgatgagtgagttatgtatttgtctg |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2949613 |
tatggtaaagagtccctataatacaaaagtaagcaggtgtatatgccagtttttaaggagatttttcctagatttgatgagtgagttatgtatttgtctg |
2949712 |
T |
|
| Q |
411 |
accaaaataggcatctcaagtaaatctactcatggatatcattgaatgcttcaactcctaaacttgtttgtaatgctttgttcgacttgaaatctttcca |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2949713 |
accaaaataggcatctcaagtaaatctactcatggatatcattgaatgcttcaactcctaaacttgtttgtaatgctttgttcgacttgaaatctttcca |
2949812 |
T |
|
| Q |
511 |
atatctatactaaattttcaacaggaggcacatacatacttttcctaatccttcatttttatgtagaggaaaatcttttgatagatcttttttctcagca |
610 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2949813 |
atatctatactaaattttcaacaggaggcacatacatacttttcctaatccttcatttttatgtagaggaaaatcttttgatagatcttttttctcagca |
2949912 |
T |
|
| Q |
611 |
accaaaatggatatataaatta |
632 |
Q |
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| T |
2949913 |
accaaaatggatatataaatta |
2949934 |
T |
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