View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9301-LTR4-TNT-insertion-5 (Length: 255)
Name: F9301-LTR4-TNT-insertion-5
Description: F9301-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9301-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 10 - 247
Target Start/End: Original strand, 32094722 - 32094959
Alignment:
| Q |
10 |
gagcagacacgaagttccaaccacgaaaaaagccaggttgatatatgttgcttgatcactttgaaatggaagttaattcttgcatggaaaaagccaattt |
109 |
Q |
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| T |
32094722 |
gagcagacacgaagttccaaccacgaaaaaagccaggttgatatatgttgcttgatcactttgaaatggaagttaattcttgcatggaaaaagccaattt |
32094821 |
T |
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| Q |
110 |
tttcacattccaatgcaatattttcgcgattttaagaagttatataatgaaatctttgtttaataaagagttatatttgttttgcagcttgtgcacctgt |
209 |
Q |
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| T |
32094822 |
tttcacattccaatgcaatattttcgcgattttaagaagttatataatgaaatctttgtttaataaagagttatatttgttttgcagcttgtgcacctgt |
32094921 |
T |
|
| Q |
210 |
cctccttcccgcccgagttgttcaagctctaaatatta |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
32094922 |
cctccttcccgcccgagttgttcaagctctaaatatta |
32094959 |
T |
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