View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9301-LTR4-TNT-insertion-7 (Length: 92)
Name: F9301-LTR4-TNT-insertion-7
Description: F9301-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9301-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 65; Significance: 4e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 4e-29
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 22796954 - 22796878
Alignment:
| Q |
6 |
caacattttctgcagttttctttacctgagtatggatatcaaataaacttgtctaaacttggaatgcattaagatta |
82 |
Q |
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| T |
22796954 |
caacattttctgcagttttctttacctgaatatggatatcaaataaacttgtcacaacttggaatgcattaagatta |
22796878 |
T |
|
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