View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9302-LTR4-TNT-insertion-2 (Length: 700)
Name: F9302-LTR4-TNT-insertion-2
Description: F9302-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9302-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 684; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 7 - 690
Target Start/End: Complemental strand, 24030975 - 24030292
Alignment:
| Q |
7 |
agttctgataagaggttctcatgattagtccattatcaatgtatctttaaaccaagaaaatgggaaagttaaaggatttacctttcttttggccgtgtgc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24030975 |
agttctgataagaggttctcatgattagtccattatcaatgtatctttaaaccaagaaaatgggaaagttaaaggatttacctttcttttggccgtgtgc |
24030876 |
T |
|
| Q |
107 |
ctgtcattgccgccatacttcctgttaaatacgtctatttgtctgttcaaaaactcaaatttctctttatccgatcccaacttcaagaatagattaccat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24030875 |
ctgtcattgccgccatacttcctgttaaatacgtctatttgtctgttcaaaaactcaaatttctctttatccgatcccaacttcaagaatagattaccat |
24030776 |
T |
|
| Q |
207 |
aggaagccttttcaaggaagagatgctcaagttccccaagctcttccattatgaaatcatagttagttgcgatccttttaagatcaaatgttgattccac |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24030775 |
aggaagccttttcaaggaagagatgctcaagttccccaagctcttccattatgaaatcatagttagttgcgatccttttaagatcaaatgttgattccac |
24030676 |
T |
|
| Q |
307 |
tttggggtcgaatgacctggcttgcacggaaacaatacccccacttatcgaagattcgccatcacctgttcaagttttaatcaatatgtaccaaaatgaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24030675 |
tttggggtcgaatgacctggcttgcacggaaacaatacccccacttatcgaagattcgccatcacctgttcaagttttaatcaatatgtaccaaaatgaa |
24030576 |
T |
|
| Q |
407 |
catttgattacaataaaaatcataaatttagaagagagatatatacccctgctgttacaatgttgaaatacacctttattttcaagtaatagttgattgt |
506 |
Q |
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| T |
24030575 |
catttgattacaataaaaatcataaatttagaagagagatatatacccctgctgttacaatgttgaaatacacctttattttcaagtaatagttgattgt |
24030476 |
T |
|
| Q |
507 |
ccggattacaatagtacttgagcgaaagaaggggacccagtccatcttggttcaaagaagggctttgtagttgaccaagattgctatccaaaggtgcaaa |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24030475 |
ccggattacaatagtacttgagcgaaagaaggggacccagtccatcttggttcaaagaagggctttgtagttgaccaagattgctatccaaaggtgcaaa |
24030376 |
T |
|
| Q |
607 |
caccttgatcattttggacatataattttgctcaactaatctcttaaattttttgagattgtttgctattttactcatagatta |
690 |
Q |
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| T |
24030375 |
caccttgatcattttggacatataattttgctcaactaatctcttaaattttttgagattgtttgctattttactcatagatta |
24030292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 617 - 690
Target Start/End: Complemental strand, 24030109 - 24030036
Alignment:
| Q |
617 |
attttggacatataattttgctcaactaatctcttaaattttttgagattgtttgctattttactcatagatta |
690 |
Q |
| |
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|||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24030109 |
attttgaacatataattctgctcgactaatctcttaaattttttgagattgtttgctattttactcatagatta |
24030036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 617 - 690
Target Start/End: Original strand, 24033235 - 24033308
Alignment:
| Q |
617 |
attttggacatataattttgctcaactaatctcttaaattttttgagattgtttgctattttactcatagatta |
690 |
Q |
| |
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|||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24033235 |
attttgaacatataattctgctcgactaatctcttaaattttttgagattgtttgctattttactcatagatta |
24033308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 617 - 685
Target Start/End: Original strand, 24033809 - 24033877
Alignment:
| Q |
617 |
attttggacatataattttgctcaactaatctcttaaattttttgagattgtttgctattttactcata |
685 |
Q |
| |
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|||||| |||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24033809 |
attttgaacatataattctactcgactaatctcttaaattttttgagattgtttgctattttactcata |
24033877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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