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This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: F9302-LTR4-TNT-insertion-3 (Length: 594)
Name: F9302-LTR4-TNT-insertion-3
Description: F9302-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] F9302-LTR4-TNT-insertion-3
[» ] scaffold0010 (1 HSPs)
[» ] scaffold0018 (2 HSPs)
[» ] scaffold0003 (1 HSPs)
Alignment Details
Target: chr7 (Bit Score: 575; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 7 - 585
Target Start/End: Complemental strand, 31201182 - 31200604
Alignment:
Q
7
agtaggatccccggacacaggtgaaaattgacatttatatgaccacagatctcatcctatcatgattttggtttgcacttgataacaaattaattacatt
106
Q
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
31201182
agtaggatctccggacacaggtgaaaattgacatttatatgaccacagatctcatcctatcatgattttggtttgcacttgataacaaattaattacatt
31201083
T
Q
107
gtcattatagtatgatatcatatggtatttgagatgatgcacgaaaaaacgggccttgtttgttatcattgccttggaacaaaaagggtgtagaattact
206
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
31201082
gtcattatagtatgatatcatatggtatttgagatgatgcacgaaaaaacgggccttgtttgttatcattgccttggaacaaaaagggtgtagaattact
31200983
T
Q
207
atttgctacgggttcaagaaaggacatgtgaaaaatagatggagggtcataattcataagcatgggaacattttctgttttgaactaattaattgagtgg
306
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
31200982
atttgctacgggttcaagaaaggacatgtgaaaaatagatggagggtcataattcataagcatgggaacattttctgttttgaactaattaattgagtgg
31200883
T
Q
307
gtgtacccagtggcgttgccaggaccctgaaccagggggttcaatcttttgaactttgattaataattataacaatatatacaaaaaattacatttactt
406
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
31200882
gtgtacccagtggcgttgccaggaccctgaaccagggggttcaatcttttgaactttgattaataattataacaatatatacaaaaaattacatttactt
31200783
T
Q
407
aatttacattgtactaaaatgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattta
506
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
31200782
aatttacattgtactaaaatgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccattta
31200683
T
Q
507
tcttccatttcattatgcgttatattgttcacaacctccatagcaaaaaatgatcgttaaacagttgttgtgacaattg
585
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
31200682
tcttccatttcattatgcgttatattgttcacaacctccatagcaaaaaatgatcgttaaacagttgttgtgacaattg
31200604
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 427 - 516
Target Start/End: Original strand, 39051324 - 39051413
Alignment:
Q
427
gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccattt
516
Q
|||||||||||||||||| |||||| ||||| || |||||| | |||||||||||||||| ||| ||||||||||| |||| ||||||
T
39051324
gttgaataatcaactcatcatcaatcttgtccgccacatctctctcaatataagtcacaagataatcattcatccattcatctcccattt
39051413
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 310 - 393
Target Start/End: Complemental strand, 31294053 - 31293970
Alignment:
Q
310
tacccagtggcgttgccaggaccctgaaccagggggttcaatcttttgaactttgattaataattataacaatatatacaaaaa
393
Q
|||||| ||||||||||||||||||| |||||||||||| | |||| | | | |||||||||||||| ||||||| ||||||
T
31294053
tacccaatggcgttgccaggaccctgggtcagggggttcaaacctttgtaatataattaataattataataatatattcaaaaa
31293970
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 314 - 392
Target Start/End: Complemental strand, 42629190 - 42629110
Alignment:
Q
314
cagtggcgttgccaggaccctgaaccagggggttcaatcttttgaactttga--ttaataattataacaatatatacaaaa
392
Q
||||||||||||||||||| | | |||||||||||| |||||||| ||| | ||||||||||||| |||||||| ||||
T
42629190
cagtggcgttgccaggaccttaaggcagggggttcaaacttttgaattttaattttaataattataataatatatataaaa
42629110
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 477
Target Start/End: Original strand, 285651 - 285702
Alignment:
Q
426
tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatat
477
Q
|||||| |||| ||||| ||||||||||||||||| |||||||||| |||||
T
285651
tgttgagtaataaactctttatcaatgttgtcgaatatatctctttcaatat
285702
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 387
Target Start/End: Original strand, 17193510 - 17193583
Alignment:
Q
314
cagtggcgttgccaggaccctgaaccagggggttcaatcttttgaactttgattaataattataacaatatata
387
Q
|||||||||||| |||||||| | |||||||||||| ||||||| |||| |||||||||||||| ||||||||
T
17193510
cagtggcgttgctaggaccctagatcagggggttcaaacttttgacctttaattaataattataataatatata
17193583
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 509
Target Start/End: Complemental strand, 10354023 - 10353940
Alignment:
Q
426
tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatct
509
Q
|||||||| |||| ||||||||||||||||| ||||| |||| | | |||||||| ||| ||||||| ||||||||||| ||||
T
10354023
tgttgaatgatcacctcattatcaatgttgttgaacacatctttctcaatataagccactagacaatcattcatccattcatct
10353940
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 426 - 491
Target Start/End: Complemental strand, 33900106 - 33900041
Alignment:
Q
426
tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaa
491
Q
|||||||||||||||||||||||||||||| || | | ||||| |||||||||| ||||||||||
T
33900106
tgttgaataatcaactcattatcaatgttgccggatagatctcgtttaatataaaccacaagacaa
33900041
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 515
Target Start/End: Complemental strand, 29638900 - 29638812
Alignment:
Q
427
gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatt
515
Q
|||||||||||||||||| |||||| ||||| || |||||| | ||||||||| || ||||||| ||||||||| | |||| |||||
T
29638900
gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtgacgagacaatcattcatccaatcatctcccatt
29638812
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 30329249 - 30329205
Alignment:
Q
306
ggtgtacccagtggcgttgccaggaccctgaaccagggggttcaa
350
Q
|||| ||||| ||||||||||||||||||| ||||||||||||||
T
30329249
ggtgaacccactggcgttgccaggaccctggaccagggggttcaa
30329205
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 490
Target Start/End: Original strand, 1623346 - 1623393
Alignment:
Q
443
attatcaatgttgtcgaacatatctcttttaatataagtcacaagaca
490
Q
||||||||||||||||||||||||| || |||||||| |||| |||||
T
1623346
attatcaatgttgtcgaacatatcttttctaatataaatcaccagaca
1623393
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 490
Target Start/End: Complemental strand, 38475975 - 38475912
Alignment:
Q
427
gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagaca
490
Q
|||||||||||||||||||||||| || | ||||| |||||| | ||| ||||||||||||||
T
38475975
gttgaataatcaactcattatcaacctttttgaacacatctctctcaatgtaagtcacaagaca
38475912
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 456
Target Start/End: Original strand, 1436911 - 1436940
Alignment:
Q
427
gttgaataatcaactcattatcaatgttgt
456
Q
||||||||||||||||||||||||||||||
T
1436911
gttgaataatcaactcattatcaatgttgt
1436940
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 15007004 - 15007053
Alignment:
Q
314
cagtggcgttgccaggaccctgaaccagggggttcaatcttttgaacttt
363
Q
|||| |||||||||||||||| || |||||||||||| | ||||||||||
T
15007004
cagtagcgttgccaggaccctaaagcagggggttcaaacctttgaacttt
15007053
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0010 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 427 - 521
Target Start/End: Original strand, 250355 - 250449
Alignment:
Q
427
gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatttcatta
521
Q
|||||||||||||||||| |||||| ||||| || |||||| | |||||||||||| ||||||| ||||||||| | |||| |||||| ||||
T
250355
gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatttgatta
250449
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 427 - 516
Target Start/End: Original strand, 3694151 - 3694240
Alignment:
Q
427
gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccattt
516
Q
||||||||||||| |||| ||||| ||||| || |||||| | |||||||||||||||||||| ||||||||||| |||| ||||||
T
3694151
gttgaataatcaattcatcgtcaatcttgtccgccacatctctctcaatataagtcacaagacaatcattcatccattcatctcccattt
3694240
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 350
Target Start/End: Original strand, 35700321 - 35700357
Alignment:
Q
314
cagtggcgttgccaggaccctgaaccagggggttcaa
350
Q
|||||||||||||||||||||| ||||||||||||||
T
35700321
cagtggcgttgccaggaccctggaccagggggttcaa
35700357
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 521
Target Start/End: Complemental strand, 14294457 - 14294362
Alignment:
Q
427
gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaat-aattcatccatttatcttccatttcatta
521
Q
||||||||||| | | |||||||||| ||||||||| |||||| ||||||||| | || ||| ||| | |||||||||||||| || |||| ||||
T
14294457
gttgaataatccattaattatcaatggtgtcgaacacatctctcttaatataacttacgagagaatcagttcatccatttatcctcaatttgatta
14294362
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 377
Target Start/End: Complemental strand, 26998230 - 26998195
Alignment:
Q
342
ggggttcaatcttttgaactttgattaataattata
377
Q
||||||||| ||||||||||||||||||||||||||
T
26998230
ggggttcaaacttttgaactttgattaataattata
26998195
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 33996204 - 33996167
Alignment:
Q
313
ccagtggcgttgccaggaccctgaaccagggggttcaa
350
Q
||||||||||||| ||||||||| ||||||||||||||
T
33996204
ccagtggcgttgctaggaccctggaccagggggttcaa
33996167
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0018 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 392
Target Start/End: Complemental strand, 38942 - 38858
Alignment:
Q
308
tgtacccagtggcgttgccaggaccctgaaccagggggttcaatcttttgaactttgattaataattataacaatatatacaaaa
392
Q
|||| ||| ||||||||||||||||||| ||||||||||| ||| |||||| |||||||||||||| |||||||||||||
T
38942
tgtaaccaatggcgttgccaggaccctgggttagggggttcaaaatttaaaactttaattaataattataataatatatacaaaa
38858
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 521
Target Start/End: Complemental strand, 38770 - 38677
Alignment:
Q
426
tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatttcatta
521
Q
|||||| |||| ||||| ||||||||||||||||| |||||||||| ||||| ||||| ||||||| ||| || ||| ||||||| ||| ||||
T
38770
tgttgagtaataaactctttatcaatgttgtcgaatatatctctttcaatat--gtcacgagacaatcgttcgtcaattcatcttccttttgatta
38677
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 515
Target Start/End: Complemental strand, 19142060 - 19141972
Alignment:
Q
427
gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatt
515
Q
|||||||||||||||||| |||||| ||||| || |||||| | |||||||||||| ||||||| ||||||||| | |||| |||||
T
19142060
gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatt
19141972
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 515
Target Start/End: Original strand, 41500069 - 41500157
Alignment:
Q
427
gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatt
515
Q
|||||||||||||||||| |||||| ||||| || |||||| | |||||||||||| ||||||| ||||||||| | |||| |||||
T
41500069
gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatt
41500157
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 521
Target Start/End: Complemental strand, 43405627 - 43405533
Alignment:
Q
427
gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatttcatta
521
Q
|||||||||||||||||| |||||| |||||| ||||||||| | ||||||||| || |||||| |||||| || | |||| |||||| ||||
T
43405627
gttgaataatcaactcatcatcaattttgtcggccatatctctctcaatataagttacgggacaatcattcatgcaatcatctcccattttatta
43405533
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 378
Target Start/End: Complemental strand, 28523903 - 28523839
Alignment:
Q
314
cagtggcgttgccaggaccctgaaccagggggttcaatcttttgaactttgattaataattataa
378
Q
||||||||||||||||||||| ||||||||||| |||| ||||||| || |||||||||||
T
28523903
cagtggcgttgccaggaccctaggttagggggttcaacctttggaactttaatcaataattataa
28523839
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 515
Target Start/End: Original strand, 675658 - 675746
Alignment:
Q
427
gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatt
515
Q
|||||||||||||||||| |||||| ||||| || |||||| | |||||||||||| ||||||| ||||||||| | |||| |||||
T
675658
gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatt
675746
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 521
Target Start/End: Complemental strand, 27836828 - 27836735
Alignment:
Q
426
tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatttcatta
521
Q
|||||| |||| ||||| ||||||||||||||||| |||||||||| ||||| ||||| ||||||| ||| || ||| ||||||| ||| ||||
T
27836828
tgttgagtaataaactctttatcaatgttgtcgaatatatctctttcaatat--gtcacgagacaatcgttcgtcaattcatcttccttttgatta
27836735
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 392
Target Start/End: Complemental strand, 27836993 - 27836915
Alignment:
Q
314
cagtggcgttgccaggaccctgaaccagggggttcaatcttttgaactttgattaataattataacaatatatacaaaa
392
Q
||||||||||| |||||| ||| ||||||||||| ||| |||||| |||||||||||||| |||||||||||||
T
27836993
cagtggcgttgtcaggactctggggtagggggttcaaaatttaaaactttaattaataattataataatatatacaaaa
27836915
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 368
Target Start/End: Complemental strand, 35765079 - 35765025
Alignment:
Q
314
cagtggcgttgccaggaccctgaaccagggggttcaatcttttgaactttgatta
368
Q
|||||||||||||||||||| || ||| |||||||| |||||||||||| ||||
T
35765079
cagtggcgttgccaggaccccgagtcagcgggttcaaacttttgaactttaatta
35765025
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 368
Target Start/End: Complemental strand, 46764244 - 46764190
Alignment:
Q
314
cagtggcgttgccaggaccctgaaccagggggttcaatcttttgaactttgatta
368
Q
|||||||||||||||||||| || ||| |||||||| |||||||||||| ||||
T
46764244
cagtggcgttgccaggaccccgagtcagcgggttcaaacttttgaactttaatta
46764190
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 350
Target Start/End: Original strand, 48022244 - 48022277
Alignment:
Q
317
tggcgttgccaggaccctgaaccagggggttcaa
350
Q
||||||||||||||||||| ||||||||||||||
T
48022244
tggcgttgccaggaccctggaccagggggttcaa
48022277
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 350
Target Start/End: Complemental strand, 10440823 - 10440787
Alignment:
Q
314
cagtggcgttgccaggaccctgaaccagggggttcaa
350
Q
||||||||||||||||| |||| ||||||||||||||
T
10440823
cagtggcgttgccaggatcctggaccagggggttcaa
10440787
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 386
Target Start/End: Original strand, 34008778 - 34008850
Alignment:
Q
314
cagtggcgttgccaggaccctgaaccagggggttcaatcttttgaactttgattaataattataacaatatat
386
Q
||||||||||| |||||||||| |||||||||||| | |||| | | | |||||||||||||| |||||||
T
34008778
cagtggcgttgtcaggaccctgggtcagggggttcaaacctttgtaatataattaataattataataatatat
34008850
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 515
Target Start/End: Complemental strand, 4816285 - 4816197
Alignment:
Q
427
gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatt
515
Q
|||||||||||||||||| |||||| ||||| || |||||| | |||||||||||| ||||||| ||||||||| | |||| |||||
T
4816285
gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatccaatcatctcccatt
4816197
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 313 - 368
Target Start/End: Complemental strand, 43591202 - 43591147
Alignment:
Q
313
ccagtggcgttgccaggaccctgaaccagggggttcaatcttttgaactttgatta
368
Q
||||||||||||||||||||| ||| ||| |||||||| |||||||||||| ||||
T
43591202
ccagtggcgttgccaggaccccgaatcagcgggttcaaacttttgaactttaatta
43591147
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 501
Target Start/End: Complemental strand, 22581783 - 22581709
Alignment:
Q
427
gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatcc
501
Q
|||||||||||||||||| |||||| ||||| || |||||| | |||||||||||| ||||||| ||||||||
T
22581783
gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagtcacgagacaatcattcatcc
22581709
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 387
Target Start/End: Original strand, 41003111 - 41003181
Alignment:
Q
317
tggcgttgccaggaccctgaaccagggggttcaatcttttgaactttgattaataattataacaatatata
387
Q
|||||||||||||| |||||| ||| |||||||| ||||||| ||| |||||||| ||||| ||||||||
T
41003111
tggcgttgccaggatcctgaatcagagggttcaaaattttgaattttaattaataactataataatatata
41003181
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 426 - 578
Target Start/End: Original strand, 8265646 - 8265795
Alignment:
Q
426
tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatttcattatgcg
525
Q
||||||| ||||||| ||||||||| ||||| || || ||||| |||||||||||||||||||| |||||| |||| ||||| ||||| |||| |
T
8265646
tgttgaacaatcaacctattatcaatattgtctaatatgtctctc--aatataagtcacaagacaatcattcattcattcatctt-catttgattacaca
8265742
T
Q
526
ttatattgttcacaacctccatagcaaaaaatgatcgttaaacagttgttgtg
578
Q
| || | |||||||||| ||||||| |||| || |||| ||||||||||||
T
8265743
atctagttttcacaaccttcatagcataaaaggaccgtttgacagttgttgtg
8265795
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 350
Target Start/End: Complemental strand, 32864432 - 32864396
Alignment:
Q
314
cagtggcgttgccaggaccctgaaccagggggttcaa
350
Q
|||||||||||||||||||||| ||||||||||||||
T
32864432
cagtggcgttgccaggaccctggaccagggggttcaa
32864396
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 515
Target Start/End: Complemental strand, 34059854 - 34059766
Alignment:
Q
427
gttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatt
515
Q
|||||||||||||||||| |||||| ||||| || |||||| | ||||||||| || ||||||| ||||||||| | |||| |||||
T
34059854
gttgaataatcaactcatcatcaattttgtccgccacatctctctcaatataagttacgagacaatcattcatccaatcatctcccatt
34059766
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 515
Target Start/End: Complemental strand, 10069300 - 10069247
Alignment:
Q
462
atatctcttttaatataagtcacaagacaataattcatccatttatcttccatt
515
Q
||||| |||| |||||||||||| ||||||| ||||||||||| ||| ||||||
T
10069300
atatccctttcaatataagtcactagacaatcattcatccattcatcctccatt
10069247
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 462
Target Start/End: Original strand, 12371580 - 12371616
Alignment:
Q
426
tgttgaataatcaactcattatcaatgttgtcgaaca
462
Q
||||||||||||||||||| |||||||||| ||||||
T
12371580
tgttgaataatcaactcatcatcaatgttgccgaaca
12371616
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 387
Target Start/End: Complemental strand, 6863462 - 6863400
Alignment:
Q
325
ccaggaccctgaaccagggggttcaatcttttgaactttgattaataattataacaatatata
387
Q
|||||||| ||| || ||||||||| ||||| |||||||||||||||||||| ||||||||
T
6863462
ccaggaccttgagtcacggggttcaaacttttaaactttgattaataattatagtaatatata
6863400
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 524
Target Start/End: Complemental strand, 40142312 - 40142214
Alignment:
Q
426
tgttgaataatcaactcattatcaatgttgtcgaacatatctcttttaatataagtcacaagacaataattcatccatttatcttccatttcattatgc
524
Q
|||||||||||||||||| |||||||||||| |||| | || | ||||||||||| ||||||| |||||||| | |||| |||||| |||||||
T
40142312
tgttgaataatcaactcacgatcaatgttgtctaacacactcctctcaatataagtcatgagacaatcgttcatccactcatctcccatttgattatgc
40142214
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 383
Target Start/End: Original strand, 3921869 - 3921938
Alignment:
Q
315
agtggcgttgccaggaccctgaacca-gggggttcaatcttttgaactttgattaataattataacaata
383
Q
||||||||||||||||||||| | || |||||||||| ||||||| | || |||||||||| ||| ||||
T
3921869
agtggcgttgccaggaccctggatcaggggggttcaaacttttgatccttaattaataattgtaataata
3921938
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 27910020 - 27910069
Alignment:
Q
314
cagtggcgttgccaggaccctgaaccagggggttcaatcttttgaacttt
363
Q
||||||||||||||||||||| | |||||||||||| | ||||||||||
T
27910020
cagtggcgttgccaggaccctagagcagggggttcaaacctttgaacttt
27910069
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 377
Target Start/End: Complemental strand, 2869097 - 2869033
Alignment:
Q
313
ccagtggcgttgccaggaccctgaaccagggggttcaatcttttgaactttgattaataattata
377
Q
|||||||||||||||||| |||| |||||| | ||| ||||||||||| |||||||||||||
T
2869097
ccagtggcgttgccaggaacctgtgtcaggggttcaaattttttgaactttaattaataattata
2869033
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 362
Target Start/End: Complemental strand, 418474 - 418429
Alignment:
Q
317
tggcgttgccaggaccctgaaccagggggttcaatcttttgaactt
362
Q
||||||||||||||||||| | |||||||||||| ||||| |||||
T
418474
tggcgttgccaggaccctggatcagggggttcaaacttttaaactt
418429
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
© Oklahoma State University
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