View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9303-LTR4-TNT-insertion-1 (Length: 384)
Name: F9303-LTR4-TNT-insertion-1
Description: F9303-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9303-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 5 - 357
Target Start/End: Complemental strand, 45207306 - 45206954
Alignment:
| Q |
5 |
acatgagcataggttttgggatgaattatttacaagctttttcgataaagatctaagaccccccatatttaactctatccaatttagcctccgcaatacc |
104 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45207306 |
acataagcataggttttgggatgaattatttacaagctttttcgataaagatctaagaccccccatatttaactctatccaatttagcctccgcaatacc |
45207207 |
T |
|
| Q |
105 |
acttttttgtgttaactcaggagaaaggtccggagtttgtaagaaaagtttcgccaagaattgtttcaccaggaatcaaactcaagttatcctgaacact |
204 |
Q |
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| T |
45207206 |
acttttttgtgttaactcaggagaaaggtccggagtttgtaagaaaagtttcgccaagaattgtttcaccaggaatcaaactcaagttatcctgaacact |
45207107 |
T |
|
| Q |
205 |
aacaattcgtttttggtaaagcgtattaaccacttgagtccaattgcttggatggtgcaataaccctttaaaactactagtggtggtagtaaataataat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45207106 |
aacaattcgtttttggtaaagcgtattaaccacttgagtccaattgcttggatggtgcaatatccctttaaaactactagtggtggtagtaaataataat |
45207007 |
T |
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| Q |
305 |
gatctacagccaatctcaaaatattgaaatttgcaaacagttttcttagatta |
357 |
Q |
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| T |
45207006 |
gatctacagccaatctcaaaatattgaaatttgcaaacagttttcttagatta |
45206954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 25296828 - 25296873
Alignment:
| Q |
157 |
gccaagaattgtttcacc-aggaatcaaactcaagttatcctgaac |
201 |
Q |
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| T |
25296828 |
gccaagaattgttccaccgaggaatcaaactcaagttctcctgaac |
25296873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 188
Target Start/End: Original strand, 26400612 - 26400641
Alignment:
| Q |
159 |
caagaattgtttcaccaggaatcaaactca |
188 |
Q |
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| T |
26400612 |
caagaattgtttcaccaggaatcaaactca |
26400641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 25517078 - 25517035
Alignment:
| Q |
159 |
caagaattgtttca--ccaggaatcaaactcaagttatcctgaa |
200 |
Q |
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| T |
25517078 |
caagaattgtttcaatccaggaatcaaactcaagttctcctgaa |
25517035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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