View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9303-LTR4-TNT-insertion-8 (Length: 501)
Name: F9303-LTR4-TNT-insertion-8
Description: F9303-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9303-LTR4-TNT-insertion-8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 487; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 7 - 493
Target Start/End: Complemental strand, 47871679 - 47871193
Alignment:
| Q |
7 |
agctttgcattgaaactatcgtccaacataatgttgctggattttatgtctctatgaatcacacattgttcccattcttcatgaagatacaacaatgccg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47871679 |
agctttgcattgaaactatcgtccaacataatgttgctggattttatgtctctatgaatcacacattgttcccattcttcatgaagatacaacaatgccg |
47871580 |
T |
|
| Q |
107 |
aagccaaatccatagcaatgttgtacctcacttgccatgtcaatatgctttttccgcgatataggtgagaatctaagctaccattttgcatgaactcgta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47871579 |
aagccaaatccatagcaatgttgtacctcacttgccatgtcaatatgctttttccgcgatataggtgagaatctaagctaccattttgcatgaactcgta |
47871480 |
T |
|
| Q |
207 |
tataaggaggaagtcttttttcatgtgacaccaaccaattagttgtactaaattcctgtgcctaagttggctaatgatcttcacttcagttgcatattcc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47871479 |
tataaggaggaagtcttttttcatgtgacaccaaccaattagttgtactaaattcctgtgcctaagttggctaatgatcttcacttcagttgcatattcc |
47871380 |
T |
|
| Q |
307 |
tttatcccttgtttagactctcttgatattctctttatagcaacattggaatctatgtctttcaaatagcctttataaacaccaccaaaaccaccttgtc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47871379 |
tttatcccttgtttagactctcttgatattctctttatagcaacattggaatctatgtctttcaaatagcctttataaacaccaccaaaaccaccttgtc |
47871280 |
T |
|
| Q |
407 |
ctatcttttgtgtttcttcaaagttattggttgcacttaccaatttattatagcaaaactttttaggtccagttcccttttggaatt |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47871279 |
ctatcttttgtgtttcttcaaagttattggttgcacttaccaatttattatagcaaaactttttaggtccagttcccttttggaatt |
47871193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 7 - 493
Target Start/End: Original strand, 47873866 - 47874352
Alignment:
| Q |
7 |
agctttgcattgaaactatcgtccaacataatgttgctggattttatgtctctatgaatcacacattgttcccattcttcatgaagatacaacaatgccg |
106 |
Q |
| |
|
||||| ||||||||| | | ||| ||||| |||||||||||||| | || ||||||| ||||||||||||||||||||||||||| ||||| | ||| | |
|
|
| T |
47873866 |
agcttagcattgaaattgttgtctaacatgatgttgctggatttgacatccctatgaagcacacattgttcccattcttcatgaaggtacaaaagtgctg |
47873965 |
T |
|
| Q |
107 |
aagccaaatccatagcaatgttgtacctcacttgccatgtcaatatgctttttccgcgatataggtgagaatctaagctaccattttgcatgaactcgta |
206 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
47873966 |
aagccaagtccatagcaatgttgtacctcatttgccatgtcaatacgctttttccgcggtatagatgagaatctaagctaccattttgcatgaactcata |
47874065 |
T |
|
| Q |
207 |
tataaggaggaagtcttttttcatgtgacaccaaccaattagttgtactaaattcctgtgcctaagttggctaatgatcttcacttcagttgcatattcc |
306 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || ||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
47874066 |
tataaggaggaagtcccttttcttgtgacaccaaccaattagttgtactaaattcctatgtctaagctggccaatgatcttcacttcagttgcatattcc |
47874165 |
T |
|
| Q |
307 |
tttatcccttgtttagactctcttgatattctctttatagcaacattggaatctatgtctttcaaatagcctttataaacaccaccaaaaccaccttgtc |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
47874166 |
tttatcccttgtttagactctcttgatattctctttatagcaacattggtatctatatctttcaaatagcctttataaacaccaccaaaaccaccttgcc |
47874265 |
T |
|
| Q |
407 |
ctatcttttgtgtttcttcaaagttattggttgcacttaccaatttattatagcaaaactttttaggtccagttcccttttggaatt |
493 |
Q |
| |
|
||||||||| || |||| |||||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
47874266 |
ctatcttttctgcttctgcaaagttatttgttgcactcaccaatttgttatagcaaaactttttaggtccagtgcccttttggaatt |
47874352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 22875038 - 22875085
Alignment:
| Q |
48 |
ttttatgtctctatgaatcacacattgttcccattcttcatgaagata |
95 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||| ||||| |
|
|
| T |
22875038 |
ttttatgtctctatgaatcacaactttttcccattcttcatgtagata |
22875085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 5e-60; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 28 - 493
Target Start/End: Complemental strand, 36931387 - 36930922
Alignment:
| Q |
28 |
tccaacataatgttgctggattttatgtctctatgaatcacacattgttcccattcttcatgaagatacaacaatgccgaagccaaatccatagcaatgt |
127 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || |||| |||||| |||||||||||||| || || || | |||||| |||||||| ||| || || | |
|
|
| T |
36931387 |
tccaacataatgttactggatttaatgtccctgtgaagcacacactgttcccattcttcctgtaggtaaagcaatgctgaagccaagcccaatgctatat |
36931288 |
T |
|
| Q |
128 |
tgtacctcacttgccatgtcaatatgctttttccgcgatataggtgagaatctaagctaccattttgcatgaactcgtatataaggaggaagtctttttt |
227 |
Q |
| |
|
| ||||||| | ||||||||||| ||| ||| | ||||| |||||||||||||| |||||| ||||||||| |||||||| || || || || || |
|
|
| T |
36931287 |
tatacctcattgtccatgtcaataagctctttttactgtatagatgagaatctaagcttccatttgacatgaactcatatataagaagaaaatcattctt |
36931188 |
T |
|
| Q |
228 |
catgtgacaccaaccaattagttgtactaaattcctgtgcctaagttggctaatgatcttcacttcagttgcatattcctttatcccttgtttagactct |
327 |
Q |
| |
|
| | || |||||||||| |||||||||||||||||||| || | |||||| |||| |||||||||||| || ||||| ||| || ||| |||||||| |
|
|
| T |
36931187 |
cctatggcaccaaccaagaagttgtactaaattcctgtgtctcaattggcttatgaccttcacttcagtggcgtattctagtattccctgtctagactct |
36931088 |
T |
|
| Q |
328 |
cttgatattctctttatagcaacattggaatctatgtctttcaaatagcctttataaacaccaccaaaaccaccttgtcctatcttttgtgtttcttcaa |
427 |
Q |
| |
|
|||||||| ||||| | |||||||| ||||| || |||||||||||| ||||| || |||||||||||||||||||| |||| ||| || ||| || |
|
|
| T |
36931087 |
cttgatatcctcttgacagcaacataggaatttaagtctttcaaataacctttgtatacaccaccaaaaccaccttgccctaccttacctgactctgaaa |
36930988 |
T |
|
| Q |
428 |
agttattggttgcacttaccaatttattatagcaaaactttttaggtccagttcccttttggaatt |
493 |
Q |
| |
|
| ||||| |||||||| || | || ||| ||| |||| | |||||||||| |||||||||||||| |
|
|
| T |
36930987 |
atttatttgttgcactcactagttcattgtaggaaaatctcttaggtccagatcccttttggaatt |
36930922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 5820970 - 5820862
Alignment:
| Q |
68 |
cacattgttcccattcttcatgaagatacaacaatgccgaagccaaatccatagcaatgttgtacctcacttgccatgtcaatatgctttttccgcgata |
167 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||| |||| ||| ||||||||||| ||||||| ||||| |
|
|
| T |
5820970 |
cacattgttcccattcttcatgaaggtacaacaatgctg---ccaaatccataacaatgttgtagctcatatgcaatgtcaatatgatttttccacgata |
5820874 |
T |
|
| Q |
168 |
taggtgagaatc |
179 |
Q |
| |
|
| |||||||||| |
|
|
| T |
5820873 |
ttggtgagaatc |
5820862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 293
Target Start/End: Complemental strand, 36934536 - 36934270
Alignment:
| Q |
27 |
gtccaacataatgttgctggattttatgtctctatgaatcacacattgttcccattcttcatgaagatacaacaatgccgaagccaaatccatagcaatg |
126 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |||||||||||||||| |||||||||||| || | ||| | ||||||||| ||||| | | ||| || |
|
|
| T |
36934536 |
gtccaacattatgttgcttgattttatgtccctatgaatcacacatttttcccattcttcctgcaaataaagcaatgccgaggccaacccaagagctata |
36934437 |
T |
|
| Q |
127 |
ttgtacctcacttgccatgtcaatatgctttttccgcgatataggtgagaatctaagctaccattttgcatgaactcgtatataaggaggaagtcttttt |
226 |
Q |
| |
|
|||||||| | | ||| | ||| |||||| ||||||| | || ||| | |||||||| ||||| ||||| | |||||||| |||| | || || | |
|
|
| T |
36934436 |
ttgtaccttaagttccaaggcaagatgcttcctccgcgaaaaagatgaaagtctaagctgccattaggcatgtattcgtatatcaggataagttcattct |
36934337 |
T |
|
| Q |
227 |
tcatgtgacaccaaccaattagttgtactaaattcctgtgcctaagttggctaatgatcttcacttc |
293 |
Q |
| |
|
|| |||| ||||||||| | |||| |||||||| || ||||| | |||||||||||||||||||| |
|
|
| T |
36934336 |
tcttgtggcaccaaccagtgagtttcactaaatttctatgcctcaactggctaatgatcttcacttc |
36934270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 441
Target Start/End: Complemental strand, 36934200 - 36934122
Alignment:
| Q |
363 |
gtctttcaaatagcctttataaacaccaccaaaaccaccttgtcctatcttttgtgtttcttcaaagttattggttgca |
441 |
Q |
| |
|
|||||| |||||||| ||||||||||| |||||||||||||| |||| ||| ||||| ||||||||||| || |||||| |
|
|
| T |
36934200 |
gtctttaaaatagcccttataaacaccgccaaaaccaccttggcctagcttctgtgtctcttcaaagttgtttgttgca |
36934122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 36939351 - 36939266
Alignment:
| Q |
28 |
tccaacataatgttgctggattttatgtctctatgaatcacacattgttcccattcttcatgaagatacaacaatgccgaagccaa |
113 |
Q |
| |
|
|||||||| ||||| || | ||||||||||||||| | ||||||||||||||||||||||| | ||| |||| ||| |||||||| |
|
|
| T |
36939351 |
tccaacatgatgttacttgcttttatgtctctatgtacaacacattgttcccattcttcatgcaaatataacagtgcagaagccaa |
36939266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 36941767 - 36941852
Alignment:
| Q |
28 |
tccaacataatgttgctggattttatgtctctatgaatcacacattgttcccattcttcatgaagatacaacaatgccgaagccaa |
113 |
Q |
| |
|
|||||||| ||||| || | ||||||||||||||| | ||||||||||||||||||||||| | ||||||||||| || ||||| |
|
|
| T |
36941767 |
tccaacatgatgttacttgcttttatgtctctatgtacaacacattgttcccattcttcatgcaagtacaacaatgcagatgccaa |
36941852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 36949601 - 36949494
Alignment:
| Q |
7 |
agctttgcattgaaactatcgtccaacataatgttgctggattttatgtctctatgaatcacacattgttcccattcttcatgaagatacaacaatgccg |
106 |
Q |
| |
|
||||||| ||||||| || |||||||||| ||||| ||||||||||||||||| | |||||| || || || |||||||| || ||||| ||||||| |
|
|
| T |
36949601 |
agctttgtattgaaattagaatccaacataacattgcttgattttatgtctctatgtagcacacaatgctcacactcttcatgcaggtacaataatgccg |
36949502 |
T |
|
| Q |
107 |
aagccaaa |
114 |
Q |
| |
|
| |||||| |
|
|
| T |
36949501 |
aggccaaa |
36949494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 36959735 - 36959628
Alignment:
| Q |
7 |
agctttgcattgaaactatcgtccaacataatgttgctggattttatgtctctatgaatcacacattgttcccattcttcatgaagatacaacaatgccg |
106 |
Q |
| |
|
||||||| ||||||| || |||||||||| ||||| ||||||||||||||||| | |||||| || || || |||||||| || ||||| ||||||| |
|
|
| T |
36959735 |
agctttgtattgaaattagaatccaacataacattgcttgattttatgtctctatgtagcacacaatgctcacactcttcatgcaggtacaataatgccg |
36959636 |
T |
|
| Q |
107 |
aagccaaa |
114 |
Q |
| |
|
| |||||| |
|
|
| T |
36959635 |
aggccaaa |
36959628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 232 - 409
Target Start/End: Original strand, 36941971 - 36942148
Alignment:
| Q |
232 |
tgacaccaaccaattagttgtactaaattcctgtgcctaagttggctaatgatcttcacttcagttgcatattcctttatcccttgtttagactctcttg |
331 |
Q |
| |
|
|||||||||||||| | ||| |||| ||| || ||||| | || |||||| ||| | ||||| | |||| |||||||||||||||| | ||| ||| || |
|
|
| T |
36941971 |
tgacaccaaccaatcaattgcactagatttctatgccttaatttgctaattatcgttacttctgatgcaaattcctttatcccttgatgagaatcttctg |
36942070 |
T |
|
| Q |
332 |
atattctctttatagcaacattggaatctatgtctttcaaatagcctttataaacaccaccaaaaccaccttgtccta |
409 |
Q |
| |
|
| | ||||| |||||||||| || | | ||||||| | | ||||| |||||||||| ||||| || |||||||||| |
|
|
| T |
36942071 |
acacactcttaatagcaacataagattttgtgtcttttagaaagcctctataaacacctccaaatcctccttgtccta |
36942148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3425 times since January 2019
Visitors: 855