View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9305-LTR4-TNT-insertion-3 (Length: 384)
Name: F9305-LTR4-TNT-insertion-3
Description: F9305-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9305-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 7 - 298
Target Start/End: Complemental strand, 14547065 - 14546774
Alignment:
| Q |
7 |
aaatatgtgaatattttagagaaataaatatataaattttgaatgagaagatttgttgactcaataagaaagaatgaaagatgcaatgcatgtataaatg |
106 |
Q |
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| T |
14547065 |
aaatatgtgaatattttagagaaataaatatataaattttgaatgagaagatttgttgactcaataagaaagaatgaaagatgcaatgcatgtataaatg |
14546966 |
T |
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| Q |
107 |
aagttggcacacaccttaaaagggatgtttctaggccaaacactaattcacataaatgaattgcatctttcattcttaggccaaacactaattcacataa |
206 |
Q |
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| T |
14546965 |
aagttggcacacaccttaaaagggatgtttctaggccaaacactaattcacataaatgaattgcatctttcattcttaggccaaacactaattcacataa |
14546866 |
T |
|
| Q |
207 |
atgaattgcatgtagatgttcttttttaatggaaaatattatatataagagaaaaacattgaatgcccgtggtttgagtgacaccataggtg |
298 |
Q |
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| T |
14546865 |
atgaattgcatgtagatgttcttttttaatggaaaatattatatataagagaaaaacattgaatgcccgtggtttgagtgacaccataggtg |
14546774 |
T |
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