View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9306-LTR4-TNT-insertion-2 (Length: 300)
Name: F9306-LTR4-TNT-insertion-2
Description: F9306-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9306-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 32023741 - 32023965
Alignment:
| Q |
7 |
atatttagcctttgtcaaatcatatttggaatataaaaatgttt--cccttcacctttnnnnnnnnnnncgttttccttaaaaa-tgtgggccaagatag |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
32023741 |
atatttagcctttgtcaaatcatatttggaatataaaaatgtttttcccttcacctttaaaaaaaaa--cgttttccttaaaaaatgtgggccaagatag |
32023838 |
T |
|
| Q |
104 |
ttaacaaggtgggtgtttgtcnnnnnnngaatgtggaagtaggagttttcatttttgctatttctttaatnnnnnnntgttttgtgcacatctcatgtga |
203 |
Q |
| |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32023839 |
ttaacaaggtgggtgtttctctttttttgaatgtggaagtaggagttttcatttttgctatttctttaataagaaaatgttttgtgcacatctcatgtga |
32023938 |
T |
|
| Q |
204 |
gtatatatatcttagtgcaaagagagg |
230 |
Q |
| |
|
||||||||||||||||||||| ||||| |
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|
| T |
32023939 |
gtatatatatcttagtgcaaaaagagg |
32023965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 32032260 - 32032484
Alignment:
| Q |
7 |
atatttagcctttgtcaaatcatatttggaatataaaaatgttt--cccttcacctttnnnnnnnnnnncgttttccttaaaaa-tgtgggccaagatag |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
32032260 |
atatttagcctttgtcaaatcatatttggaatataaaaatgtttttcccttcacctttaaaaaaaaa--cgttttccttaaaaaatgtgggccaagatag |
32032357 |
T |
|
| Q |
104 |
ttaacaaggtgggtgtttgtcnnnnnnngaatgtggaagtaggagttttcatttttgctatttctttaatnnnnnnntgttttgtgcacatctcatgtga |
203 |
Q |
| |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32032358 |
ttaacaaggtgggtgtttttctttttttgaatgtggaagtaggagttttcatttttgctatttctttaataagaaaatgttttgtgcacatctcatgtga |
32032457 |
T |
|
| Q |
204 |
gtatatatatcttagtgcaaagagagg |
230 |
Q |
| |
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||||||||||||||||||||| ||||| |
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|
| T |
32032458 |
gtatatatatcttagtgcaaaaagagg |
32032484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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