View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9307-LTR4-TNT-insertion-5 (Length: 317)
Name: F9307-LTR4-TNT-insertion-5
Description: F9307-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9307-LTR4-TNT-insertion-5 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 42891725 - 42892025
Alignment:
| Q |
8 |
atcgtgattatgaacctatccacaatccaattttcaatattatgttttttctgttaatcattatattaaactaaatcctgttgtgattagtattttttaa |
107 |
Q |
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| T |
42891725 |
atcgtgattatgaacctatccacaatccaattttcaatattatgttttttctgttaatcattatattaaactaaatcctgttgtgattagtattttttaa |
42891824 |
T |
|
| Q |
108 |
ttcataatctcagatgtcatacttctgtttttactaactattgtttacgttgtgtgcatttaattttttccttggcttaatctctttctgtggtttgata |
207 |
Q |
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| T |
42891825 |
ttcataatctcagatgtcatacttctgtttttactaactattgtttacgttgtgtgcatttaattttttccttggcttaatctctttctgtggtttgata |
42891924 |
T |
|
| Q |
208 |
ggcattgggttatgtgcatggagctcaagttgtccatgcatctgaaccagttcacgggcgtctgaggtatgcttgatcattttaaaaacattgtgtaatt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42891925 |
ggcattgggttatgtgcatggagctcaagttgtccatgcatctgaaccagttcacgggcgtctgaggtatgcttgatcattttaaaaacattgtgtaatt |
42892024 |
T |
|
| Q |
308 |
g |
308 |
Q |
| |
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| |
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| T |
42892025 |
g |
42892025 |
T |
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