View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9307-LTR4-TNT-insertion-8 (Length: 668)
Name: F9307-LTR4-TNT-insertion-8
Description: F9307-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9307-LTR4-TNT-insertion-8 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 570; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 51 - 660
Target Start/End: Complemental strand, 2663122 - 2662513
Alignment:
| Q |
51 |
ttagcatccaagcttttattgtcgtcaattttttggaccctatactgactctaaaagactgttagcatccacaatttgccttttagcatccatatttctg |
150 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2663122 |
ttagcatccaagcttttattgtcgtcaattttttggaccctatactgactctaaaagactgttagcatccacaatttgccttttagcatccatatttctg |
2663023 |
T |
|
| Q |
151 |
ctgaatttaaaacaccattttcttgtaatgctttagtgcaccagactgcccttttttaatgatgtggaattacatttgatgacgtgtcattgctagtttc |
250 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2663022 |
ctgaatctaaaacaccattttcttgtaatgctttagtgcaccagactgcccttttttaatgatgtggaattacatttgatgacgtgtcattgctagtttc |
2662923 |
T |
|
| Q |
251 |
gacaaaaaatnnnnnnnnnnnnaggaatttaaatactaacctgagggcttgcatcagcagaaacaagtatattcaaagtatttgagaaggcaagagcaga |
350 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2662922 |
gacaaaaaatggggggtgggggaggaatttaaatactaacctgagggcttgcatcagcagaaacaagtatattcaaagtatttgagaaggcaagagcaga |
2662823 |
T |
|
| Q |
351 |
aactcgtttagaatgaccctcaagcttttgaacctaacataaatgaatgatacatgaagttaattagtttaattatcctttaaaacatgtaattataatg |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2662822 |
aactcgtttagaatgaccctcaagcttttgaacctaacataaatgaatgatacatgaagttaattagtttaattatcctttaaaacatgtaattataatg |
2662723 |
T |
|
| Q |
451 |
aatgtctttattgaatgaagaaagatatatacctcatcatgcttgtgaatattgtatacacgtatactggagtcatccaagccaataagaaaagtattat |
550 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2662722 |
aatgtctttattgaatgaagaaagatatatacctcatcatgcttgtgaatattgtatacacgtatactggagtcatccaagccaataagaaaagtattat |
2662623 |
T |
|
| Q |
551 |
tatctttaggatagaaggcaagacttgttaccattggtggaggtggcatgaaagttactagagtctgcaattattatataatgtgtgacatgattagtta |
650 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2662622 |
tatctttaggatagaaggcaagacttgttaccattggtggaggtggcatgaaagttactagagtctgcaattattatataatgtgtgacatgattagtta |
2662523 |
T |
|
| Q |
651 |
aatcatatta |
660 |
Q |
| |
|
|||||||||| |
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| T |
2662522 |
aatcatatta |
2662513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 176
Target Start/End: Complemental strand, 47989865 - 47989741
Alignment:
| Q |
51 |
ttagcatccaagcttttattgtcgtcaattttttggaccctatactgactctaaaagactgttagcatccacaatttgccttttagcatccatatttctg |
150 |
Q |
| |
|
||||||||||| |||| |||||||||| |||||||||| ||||||||| || |||| | |||| ||| |||||| ||| |||||||||| |||| | |
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| T |
47989865 |
ttagcatccaaacttt-attgtcgtcatttttttggactttatactgacgcttaaaggttattagtgtccccaatttttcttctagcatccatttttcag |
47989767 |
T |
|
| Q |
151 |
ctgaatttaaaacaccattttcttgt |
176 |
Q |
| |
|
|||| |||||| | |||||||||| |
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|
| T |
47989766 |
ctgacgataaaacccaattttcttgt |
47989741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 51 - 177
Target Start/End: Complemental strand, 12908644 - 12908517
Alignment:
| Q |
51 |
ttagcatccaagcttttattgtcgtcaattttttggaccctatactgactctaaaagactgttagcatccacaatttgccttttagcatccatattt-ct |
149 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| ||| ||||| | |||||||||| |||||||||||||||||||| |||||||||||||| ||| || |
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|
| T |
12908644 |
ttagcatccaagcgtttattgtcgtaaatttttttgactctatattaactctaaaaggctgttagcatccacaatttgtcttttagcatccatttttcct |
12908545 |
T |
|
| Q |
150 |
gctgaatttaaaacaccattttcttgta |
177 |
Q |
| |
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| ||||| |||||||||||||||||||| |
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|
| T |
12908544 |
gttgaatctaaaacaccattttcttgta |
12908517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 51 - 177
Target Start/End: Complemental strand, 12933723 - 12933596
Alignment:
| Q |
51 |
ttagcatccaagcttttattgtcgtcaattttttggaccctatactgactctaaaagactgttagcatccacaatttgccttttagcatccatattt-ct |
149 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| ||| ||||| | |||||||||| |||||||||||||||||||| ||||||| |||||| ||| || |
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|
| T |
12933723 |
ttagcatccaagcgtttattgtcgtaaatttttttgactctatattaactctaaaaggctgttagcatccacaatttgtcttttaggatccatttttcct |
12933624 |
T |
|
| Q |
150 |
gctgaatttaaaacaccattttcttgta |
177 |
Q |
| |
|
| ||||| |||||||||||||||||||| |
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| T |
12933623 |
gttgaatctaaaacaccattttcttgta |
12933596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 57 - 181
Target Start/End: Original strand, 40072775 - 40072899
Alignment:
| Q |
57 |
tccaagcttttattgtcgtcaattttttggaccctatactgactctaaaagactgttagcatccacaatttgccttttagcatccatatttctgctgaat |
156 |
Q |
| |
|
||||||||||||||||| | |||||||||| | ||||| |||||||||||| || ||||| |||| |||||||||||| |||||||| ||| || ||| | |
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|
| T |
40072775 |
tccaagcttttattgtcattaattttttggcctctatattgactctaaaaggctattagcgtccataatttgcctttttgcatccatttttatgatgact |
40072874 |
T |
|
| Q |
157 |
ttaaaacaccattttcttgtaatgc |
181 |
Q |
| |
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|||||| ||||||||||||||| |
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|
| T |
40072875 |
ctaaaacgtaattttcttgtaatgc |
40072899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 206 - 236
Target Start/End: Complemental strand, 13211802 - 13211772
Alignment:
| Q |
206 |
ttaatgatgtggaattacatttgatgacgtg |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
13211802 |
ttaatgatgtggaattacatttgatgacgtg |
13211772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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