View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9308-LTR4-TNT-insertion-1 (Length: 356)
Name: F9308-LTR4-TNT-insertion-1
Description: F9308-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9308-LTR4-TNT-insertion-1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 9 - 346
Target Start/End: Original strand, 10921759 - 10922096
Alignment:
| Q |
9 |
gcacgataccacaaccgtctgccagccccgaatccgaaaaagtttcgttttctccaatataattgacgtagaacgaattccctggttgctcatatgtact |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10921759 |
gcacgataccacaaccgtctgccagccccgaatccgaaaaagtttcgttttctccaatataattgacgtagaacgaattccctggttgctcatatgtact |
10921858 |
T |
|
| Q |
109 |
aatgttcatacaggccggagaagcaaagtaaataccagaagaatattggacatgattcggacatctcatatataacacaggctttgccaataatatattg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10921859 |
aatgttcatacaggccggagaagcaaagtaaataccagaagaatattggacatgattcggacatctcatatataacacaggctttgccaataatatattg |
10921958 |
T |
|
| Q |
209 |
tacacatacatttcgtacggcaagcttatggaatatgtgtaagtgaaattatagaggcctagtgaatggggagggagggtaaaattagagtaaccaaaat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10921959 |
tacacatacatttcgtacggcaagcttatggaatatgtgtaagtgaaattatagaggcctagtgaatggggagggagggtaaaattagagtaaccaaaat |
10922058 |
T |
|
| Q |
309 |
tgacatccaacagtcgtatagtgtagttgttgtaatta |
346 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10922059 |
tgacatccaatagtcgtatagtgtagttgttgtaatta |
10922096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 11000238 - 11000161
Alignment:
| Q |
105 |
tactaatgttcatacaggccggagaagcaaagtaaataccagaagaatattggacatgattcggacatctcatatataaca |
185 |
Q |
| |
|
|||||||||||||||| || || | ||||||||||||| ||||||||||||||||| || |||||| ||| |||||||| |
|
|
| T |
11000238 |
tactaatgttcatacaagc---agcatcaaagtaaatacctgaagaatattggacatgtttaggacatgtcacatataaca |
11000161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 11003215 - 11003138
Alignment:
| Q |
105 |
tactaatgttcatacaggccggagaagcaaagtaaataccagaagaatattggacatgattcggacatctcatatataaca |
185 |
Q |
| |
|
|||||||||||||||| || || | ||||||||||||| ||||||||||||||||| || |||||| ||| |||||||| |
|
|
| T |
11003215 |
tactaatgttcatacaagc---agcatcaaagtaaatacctgaagaatattggacatgtttgggacatgtcacatataaca |
11003138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3431 times since January 2019
Visitors: 855