View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9309-LTR4-TNT-insertion-4 (Length: 112)
Name: F9309-LTR4-TNT-insertion-4
Description: F9309-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9309-LTR4-TNT-insertion-4 |
 | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0009 (Bit Score: 95; Significance: 6e-47; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 95; E-Value: 6e-47
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 201230 - 201136
Alignment:
| Q |
8 |
ataaaagcatgtgtacaagaagcaaaatatttcgctgcacatataatttaaagtgttgacaactgattgtaaaccttaagaatgatatacaatta |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
201230 |
ataaaagcatgtgtacaagaagcaaaatatttcgctgcacatataatttaaagtgttgacaactgattgtaaaccttaagaatgatatacaatta |
201136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 6e-47; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 6e-47
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 22715344 - 22715250
Alignment:
| Q |
8 |
ataaaagcatgtgtacaagaagcaaaatatttcgctgcacatataatttaaagtgttgacaactgattgtaaaccttaagaatgatatacaatta |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22715344 |
ataaaagcatgtgtacaagaagcaaaatatttcgctgcacatataatttaaagtgttgacaactgattgtaaaccttaagaatgatatacaatta |
22715250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 6e-47
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 22989881 - 22989975
Alignment:
| Q |
8 |
ataaaagcatgtgtacaagaagcaaaatatttcgctgcacatataatttaaagtgttgacaactgattgtaaaccttaagaatgatatacaatta |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22989881 |
ataaaagcatgtgtacaagaagcaaaatatttcgctgcacatataatttaaagtgttgacaactgattgtaaaccttaagaatgatatacaatta |
22989975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 6e-47
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 28949605 - 28949511
Alignment:
| Q |
8 |
ataaaagcatgtgtacaagaagcaaaatatttcgctgcacatataatttaaagtgttgacaactgattgtaaaccttaagaatgatatacaatta |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28949605 |
ataaaagcatgtgtacaagaagcaaaatatttcgctgcacatataatttaaagtgttgacaactgattgtaaaccttaagaatgatatacaatta |
28949511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 46955153 - 46955202
Alignment:
| Q |
19 |
tgtacaagaagcaaaatatttcgctgcacatataatttaaagtgttgaca |
68 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
46955153 |
tgtacaagaagcaaaatatttcgctgcacatatattttaaagtgttgaca |
46955202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2196 times since January 2019
Visitors: 8459