View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: F9310-LTR4-TNT-insertion-1 (Length: 84)
Name: F9310-LTR4-TNT-insertion-1
Description: F9310-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] F9310-LTR4-TNT-insertion-1
Alignment Details
Target: chr5 (Bit Score: 68; Significance: 5e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 5e-31
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 41170496 - 41170563
Alignment:
Q
8
ggaagctcctggaataaagtcaccgattaatgtatttggactttactcttaaacatggagcacaattg
75
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
41170496
ggaagctcctggaataaagtcaccgattaatgtatttggactttactcttaaacatggagcacaattg
41170563
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 41168595 - 41168630
Alignment:
Q
36
aatgtatttggactttactcttaaacatggagcaca
71
Q
|||||||||||||||||||||||||| |||||||||
T
41168595
aatgtatttggactttactcttaaacctggagcaca
41168630
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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