View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9310-LTR4-TNT-insertion-2 (Length: 183)

Name: F9310-LTR4-TNT-insertion-2
Description: F9310-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9310-LTR4-TNT-insertion-2
F9310-LTR4-TNT-insertion-2
[»] chr6 (11 HSPs)
chr6 (33-173)||(33212256-33212396)
chr6 (34-173)||(26713788-26713929)
chr6 (41-164)||(33590353-33590476)
chr6 (41-173)||(20820545-20820679)
chr6 (76-149)||(1567248-1567322)
chr6 (41-144)||(28551930-28552034)
chr6 (42-157)||(32719408-32719523)
chr6 (41-146)||(32221935-32222041)
chr6 (95-156)||(22788551-22788612)
chr6 (116-155)||(4464953-4464992)
chr6 (83-157)||(12779488-12779563)
[»] chr4 (24 HSPs)
chr4 (34-173)||(46176942-46177083)
chr4 (34-146)||(35959121-35959234)
chr4 (42-157)||(12708866-12708982)
chr4 (42-157)||(29114265-29114381)
chr4 (42-157)||(38136866-38136982)
chr4 (41-134)||(52636693-52636786)
chr4 (42-157)||(30198803-30198919)
chr4 (35-143)||(44076530-44076638)
chr4 (41-149)||(11976771-11976878)
chr4 (86-143)||(8827866-8827923)
chr4 (62-157)||(45899349-45899443)
chr4 (41-146)||(16318549-16318655)
chr4 (34-149)||(21081275-21081391)
chr4 (42-157)||(28175496-28175612)
chr4 (84-173)||(45823530-45823621)
chr4 (95-173)||(8828215-8828292)
chr4 (34-147)||(22891329-22891443)
chr4 (34-147)||(22942993-22943107)
chr4 (41-173)||(49668119-49668252)
chr4 (116-157)||(15498826-15498867)
chr4 (83-128)||(25843818-25843863)
chr4 (41-145)||(33500452-33500557)
chr4 (83-126)||(368043-368086)
chr4 (75-157)||(42650602-42650685)
[»] chr7 (25 HSPs)
chr7 (35-164)||(32820256-32820384)
chr7 (34-146)||(42113002-42113113)
chr7 (41-173)||(38505349-38505483)
chr7 (42-157)||(4058171-4058287)
chr7 (89-154)||(13697262-13697328)
chr7 (76-149)||(15748989-15749063)
chr7 (68-146)||(6746612-6746691)
chr7 (35-146)||(23551585-23551695)
chr7 (68-173)||(33872125-33872232)
chr7 (51-144)||(38233781-38233874)
chr7 (41-143)||(43741639-43741740)
chr7 (83-146)||(45940443-45940507)
chr7 (42-149)||(39856405-39856511)
chr7 (86-157)||(42267039-42267110)
chr7 (83-164)||(17884219-17884298)
chr7 (85-146)||(19791667-19791728)
chr7 (116-157)||(31055382-31055423)
chr7 (49-146)||(46442649-46442746)
chr7 (42-157)||(16805599-16805715)
chr7 (71-146)||(23466040-23466116)
chr7 (42-157)||(42253893-42254007)
chr7 (95-157)||(2826279-2826342)
chr7 (83-146)||(42622336-42622399)
chr7 (84-146)||(43741322-43741385)
chr7 (69-144)||(46509238-46509312)
[»] chr8 (16 HSPs)
chr8 (41-156)||(39193863-39193979)
chr8 (41-157)||(79645-79762)
chr8 (46-149)||(43239607-43239710)
chr8 (41-149)||(8228466-8228574)
chr8 (45-144)||(5911471-5911569)
chr8 (68-142)||(31149872-31149946)
chr8 (41-157)||(21173890-21174006)
chr8 (42-146)||(23932601-23932705)
chr8 (74-157)||(26772674-26772758)
chr8 (77-142)||(4166689-4166755)
chr8 (110-156)||(27085350-27085396)
chr8 (116-166)||(31297371-31297421)
chr8 (68-157)||(44879506-44879595)
chr8 (68-157)||(44880326-44880415)
chr8 (77-157)||(28416193-28416272)
chr8 (88-146)||(1840241-1840300)
[»] chr2 (30 HSPs)
chr2 (41-155)||(4003360-4003475)
chr2 (44-157)||(34757540-34757654)
chr2 (42-156)||(37194200-37194315)
chr2 (34-143)||(16519135-16519244)
chr2 (41-157)||(1364765-1364882)
chr2 (76-157)||(11515011-11515093)
chr2 (41-146)||(15555389-15555494)
chr2 (84-149)||(11949881-11949945)
chr2 (76-160)||(21626090-21626175)
chr2 (34-157)||(21834866-21834990)
chr2 (78-157)||(26905773-26905853)
chr2 (41-108)||(16625863-16625930)
chr2 (95-157)||(40211989-40212052)
chr2 (41-173)||(31082748-31082881)
chr2 (116-157)||(11522212-11522253)
chr2 (68-149)||(28539466-28539547)
chr2 (41-106)||(30072492-30072557)
chr2 (42-146)||(35550201-35550303)
chr2 (82-146)||(41100148-41100213)
chr2 (84-141)||(41656691-41656748)
chr2 (41-157)||(6656050-6656169)
chr2 (70-146)||(39819860-39819935)
chr2 (83-146)||(43572587-43572651)
chr2 (51-157)||(26599281-26599388)
chr2 (84-163)||(30523222-30523301)
chr2 (42-144)||(43190584-43190686)
chr2 (42-108)||(35412280-35412346)
chr2 (42-145)||(13018522-13018626)
chr2 (116-155)||(3254643-3254682)
chr2 (77-144)||(31584811-31584878)
[»] chr5 (18 HSPs)
chr5 (41-155)||(43496895-43497008)
chr5 (41-157)||(10437918-10438035)
chr5 (42-157)||(10842978-10843093)
chr5 (68-173)||(38568382-38568489)
chr5 (41-140)||(15974272-15974372)
chr5 (83-146)||(19389861-19389924)
chr5 (41-146)||(10955733-10955839)
chr5 (41-146)||(35683516-35683622)
chr5 (41-157)||(5772752-5772868)
chr5 (51-142)||(6044478-6044566)
chr5 (41-156)||(8943979-8944094)
chr5 (75-146)||(39649537-39649609)
chr5 (68-138)||(21916344-21916415)
chr5 (87-149)||(3925821-3925883)
chr5 (33-173)||(9684796-9684937)
chr5 (83-149)||(22103491-22103556)
chr5 (90-156)||(29022600-29022666)
chr5 (90-144)||(5836869-5836924)
[»] chr1 (35 HSPs)
chr1 (41-146)||(36269675-36269781)
chr1 (41-157)||(5584437-5584554)
chr1 (83-157)||(52068169-52068244)
chr1 (41-146)||(17760518-17760624)
chr1 (42-146)||(29092020-29092124)
chr1 (68-157)||(41432798-41432887)
chr1 (86-146)||(42333622-42333682)
chr1 (48-173)||(5970446-5970572)
chr1 (42-156)||(37649649-37649764)
chr1 (44-173)||(50225975-50226106)
chr1 (95-156)||(33579221-33579282)
chr1 (42-146)||(34154371-34154476)
chr1 (42-172)||(17556601-17556732)
chr1 (75-173)||(33324600-33324699)
chr1 (42-157)||(41817331-41817446)
chr1 (48-139)||(33854889-33854980)
chr1 (48-139)||(33925942-33926033)
chr1 (78-165)||(50097597-50097684)
chr1 (42-146)||(47742464-47742570)
chr1 (123-173)||(51246579-51246629)
chr1 (67-144)||(69692-69769)
chr1 (42-173)||(35619519-35619651)
chr1 (68-146)||(39886968-39887048)
chr1 (42-146)||(43036356-43036459)
chr1 (34-173)||(50586973-50587110)
chr1 (34-173)||(52073463-52073603)
chr1 (34-157)||(7915438-7915562)
chr1 (41-144)||(27102869-27102973)
chr1 (70-157)||(28848821-28848908)
chr1 (117-157)||(32287589-32287629)
chr1 (41-156)||(36886802-36886917)
chr1 (78-146)||(41428037-41428105)
chr1 (95-157)||(2909104-2909167)
chr1 (117-164)||(25561342-25561389)
chr1 (41-135)||(27255141-27255236)
[»] chr3 (30 HSPs)
chr3 (34-157)||(29623163-29623285)
chr3 (42-157)||(38639522-38639638)
chr3 (42-164)||(3537141-3537264)
chr3 (34-135)||(30995796-30995896)
chr3 (42-157)||(33944672-33944787)
chr3 (34-157)||(35283013-35283136)
chr3 (77-156)||(53664632-53664712)
chr3 (75-157)||(33908981-33909064)
chr3 (42-146)||(25754145-25754248)
chr3 (62-146)||(40118927-40119012)
chr3 (70-173)||(49183657-49183761)
chr3 (68-173)||(1132940-1133046)
chr3 (48-146)||(45570986-45571085)
chr3 (48-146)||(50535145-50535244)
chr3 (42-157)||(48908906-48909021)
chr3 (84-146)||(22225341-22225404)
chr3 (95-157)||(27197238-27197301)
chr3 (41-146)||(37674183-37674289)
chr3 (41-135)||(49860565-49860658)
chr3 (86-156)||(51686484-51686554)
chr3 (70-146)||(21777679-21777755)
chr3 (116-157)||(48444514-48444555)
chr3 (84-156)||(50948181-50948254)
chr3 (90-147)||(54089496-54089553)
chr3 (83-126)||(517695-517738)
chr3 (83-157)||(1339930-1340005)
chr3 (48-146)||(11500045-11500142)
chr3 (41-146)||(15499342-15499446)
chr3 (33-108)||(49855890-49855964)
chr3 (90-157)||(50345679-50345746)
[»] scaffold0031 (1 HSPs)
scaffold0031 (78-157)||(93538-93618)
[»] scaffold0128 (1 HSPs)
scaffold0128 (42-143)||(26312-26414)
[»] scaffold0248 (1 HSPs)
scaffold0248 (41-157)||(228-344)
[»] scaffold0051 (4 HSPs)
scaffold0051 (84-161)||(719-796)
scaffold0051 (84-161)||(3596-3673)
scaffold0051 (85-157)||(6789-6862)
scaffold0051 (85-157)||(7772-7845)
[»] scaffold0274 (1 HSPs)
scaffold0274 (78-157)||(15887-15966)
[»] scaffold0136 (1 HSPs)
scaffold0136 (41-146)||(2066-2171)
[»] scaffold0053 (1 HSPs)
scaffold0053 (75-146)||(29211-29282)


Alignment Details
Target: chr6 (Bit Score: 141; Significance: 3e-74; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 3e-74
Query Start/End: Original strand, 33 - 173
Target Start/End: Original strand, 33212256 - 33212396
Alignment:
Q  33 tgaaggatcaagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaa 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33212256 tgaaggatcaagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaa 33212355  T
Q  133 aaagttgtattggatgacggttttgtgggtttatatgaatt 173  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  33212356 aaagttgtattggatgacggttttgtgggtttatatgaatt 33212396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 34 - 173
Target Start/End: Original strand, 26713788 - 26713929
Alignment:
Q  34 gaaggatcaagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataat-acaacactctgctcatttggggaactaa 132  Q
    |||||| |||||| ||||||||||| | ||||| |||||| ||||||||||||||||||| ||||||| || | || |  || ||||||||||||||| |    
T  26713788 gaaggagcaagtggaagaaatagagtacattgggaggggagggctttgaggggttaatttttcttcatgataagaaaatcctcctcatttggggaactca 26713887  T
Q  133 aaagttgtattggatgacggtttt-gtgggtttatatgaatt 173  Q
    ||| |||||||||| || |||||| | |||||||||||||||    
T  26713888 aaaattgtattggaggagggttttggagggtttatatgaatt 26713929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 41 - 164
Target Start/End: Complemental strand, 33590476 - 33590353
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgt 140  Q
    ||||||||| |||||||| | | ||| |||||| |  |||| |||||||| || |||||||||||||| || || |||||||||||| ||||||| ||||    
T  33590476 caagtgaaaaaaatagaggaaaatgggaggggaggattttggggggttaacttttcttcataatacaaaaccctcctcatttggggagctaaaaaattgt 33590377  T
Q  141 attggatgacggttttgtgggttt 164  Q
    ||||||||| ||||||| ||||||    
T  33590376 attggatgagggttttgggggttt 33590353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 41 - 173
Target Start/End: Complemental strand, 20820679 - 20820545
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcattt-ggggaactaaaaagttg 139  Q
    |||||| |||||||| |||| | ||| |||||| ||||||| |||||||| || |||||||||||| | ||||| ||| ||| ||||||||||||| |||    
T  20820679 caagtggaagaaataaagaaaaatgggaggggagggctttggggggttaacttttcttcataatactaaactctcctcgtttgggggaactaaaaaattg 20820580  T
Q  140 tattggatgacggtttt-gtgggtttatatgaatt 173  Q
    ||||||||||  ||||| | || ||||||||||||    
T  20820579 tattggatgagagttttagaggatttatatgaatt 20820545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 1567248 - 1567322
Alignment:
Q  76 gctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgtattggatga 149  Q
    |||||| |||||||| || |||||||||||||| || || ||||||||| ||||||||||| |||||||||||||    
T  1567248 gctttggggggttaacttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggatga 1567322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 28552034 - 28551930
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttg 139  Q
    |||||| ||||||||||  | | ||| |||||| |||||||||||||||  || |||||||||||||| ||||| ||||||||| | ||||| ||| |||    
T  28552034 caagtggaagaaatagaagaaaatgggaggggatggctttgaggggttagcttttcttcataatacaaaactctcctcatttggagaaactataaatttg 28551935  T
Q  140 tattg 144  Q
    |||||    
T  28551934 tattg 28551930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 32719523 - 32719408
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgt 140  Q
    ||||| ||||||||||| | | ||| |  ||| ||||||| |||||||| || |||||||||||||| || || ||||||||| ||||||||||| ||||    
T  32719523 aagtggaagaaatagaggaaaatgggaaaggagggctttg-ggggttaacttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgt 32719425  T
Q  141 attggatgacggttttg 157  Q
    |||||| || |||||||    
T  32719424 attggaggagggttttg 32719408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 32221935 - 32222041
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttg 139  Q
    |||||| |||||||| |||| | | |||| ||| || ||||||||||||| || |||| ||||||  | ||||| ||||||||| ||||||||||| |||    
T  32221935 caagtggaagaaataaagaaaaatagaagaggagggttttgaggggttaacttttctttataatatcaaactctcctcatttggaggaactaaaaaattg 32222034  T
Q  140 tattgga 146  Q
    |||||||    
T  32222035 tattgga 32222041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 22788612 - 22788551
Alignment:
Q  95 tcttcataatacaacactctgctcatttggggaactaaaaagttgtattggatgacggtttt 156  Q
    |||| ||||||||| ||||| |||||||| ||||||||||| |||||||||| || ||||||    
T  22788612 tcttgataatacaaaactcttctcatttgaggaactaaaaaattgtattggaggagggtttt 22788551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 4464953 - 4464992
Alignment:
Q  116 ctcatttggggaactaaaaagttgtattggatgacggttt 155  Q
    |||||||||||||||||||| |||||||||| || |||||    
T  4464953 ctcatttggggaactaaaaaattgtattggaggagggttt 4464992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 12779488 - 12779563
Alignment:
Q  83 ggggttaatttgtcttcataatacaacactctgctcatttgggg-aactaaaaagttgtattggatgacggttttg 157  Q
    |||||||| || ||||| || ||||| || || || |||||||| |||||||||||||||||||| || |||||||    
T  12779488 ggggttaacttttcttcgtactacaaaacccttcttatttgggggaactaaaaagttgtattggaggagggttttg 12779563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 5e-27; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 34 - 173
Target Start/End: Complemental strand, 46177083 - 46176942
Alignment:
Q  34 gaaggatcaagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaa 132  Q
    |||||| |||||| ||||||||||| | ||||| |||||| || |||| ||||||||||| |||| ||||||||| || || ||||||||| ||||||||    
T  46177083 gaaggaacaagtggaagaaatagagtacattgggaggggagggttttggggggttaatttttcttaataatacaaaaccctcctcatttggaggaactaa 46176984  T
Q  133 aaagttgtattggatgacggtttt-gtgggtttatatgaatt 173  Q
    |||||||||||||| || |||||| | |||||||||||||||    
T  46176983 aaagttgtattggaggagggttttggggggtttatatgaatt 46176942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 35959121 - 35959234
Alignment:
Q  34 gaaggatcaagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcattt-ggggaactaa 132  Q
    |||||| |||||| ||||||||||| | ||||  |||||| ||||||| ||| ||||||| |||||||||||||| || || ||||||| ||||||||||    
T  35959121 gaaggagcaagtggaagaaatagagtacattgtgaggggagggctttgggggtttaatttttcttcataatacaaaaccctcctcatttgggggaactaa 35959220  T
Q  133 aaagttgtattgga 146  Q
    ||||||||||||||    
T  35959221 aaagttgtattgga 35959234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 12708982 - 12708866
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgt 140  Q
    ||||| ||||||||||| | | ||| || ||| ||||||| |||||||| || |||||||||||||| || || ||||||||| ||||||||||| ||||    
T  12708982 aagtggaagaaatagaggaaaatgggagaggagggctttggggggttaacttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgt 12708883  T
Q  141 attggatgacggttttg 157  Q
    |||||| || |||||||    
T  12708882 attggaggagggttttg 12708866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 29114381 - 29114265
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgt 140  Q
    ||||| ||||||||||| | | ||| || ||| ||||||| |||||||| || |||||||||||||| || || ||||||||| ||||||||||| ||||    
T  29114381 aagtggaagaaatagaggaaaatgggagaggagggctttggggggttaacttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgt 29114282  T
Q  141 attggatgacggttttg 157  Q
    |||||| || |||||||    
T  29114281 attggaggagggttttg 29114265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 38136982 - 38136866
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgt 140  Q
    ||||| ||||||||||| | | |||||| ||| ||||||| |||||||| || | |||||||||||| || || ||||||||| ||||||||||| ||||    
T  38136982 aagtggaagaaatagaggaaaatggaagaggagggctttggggggttaactttttttcataatacaaaacccttctcatttggaggaactaaaaaattgt 38136883  T
Q  141 attggatgacggttttg 157  Q
    |||||| || |||||||    
T  38136882 attggaggagggttttg 38136866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 41 - 134
Target Start/End: Original strand, 52636693 - 52636786
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaa 134  Q
    |||||| ||||||||||| | ||||||||  || ||||||| ||||||||||| ||||||||||| || || || ||||||||| |||||||||    
T  52636693 caagtggaagaaatagagtacattggaagatgagggctttggggggttaatttttcttcataatataaaaccctcctcatttggagaactaaaa 52636786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 30198919 - 30198803
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgt 140  Q
    ||||| ||||||||||| | | | | || ||| ||||||| |||||||| || |||||||||||||| || || ||||||||| ||||||||||| ||||    
T  30198919 aagtggaagaaatagaggaaaataggagaggagggctttggggggttaacttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgt 30198820  T
Q  141 attggatgacggttttg 157  Q
    |||||| || |||||||    
T  30198819 attggaggagggttttg 30198803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 143
Target Start/End: Original strand, 44076530 - 44076638
Alignment:
Q  35 aaggatcaagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaa 134  Q
    ||||| ||||||||| |||||||||| ||||  | |  | ||||||| ||| ||||||| |||||||||||||| ||||| |||| || |||||||||||    
T  44076530 aaggaacaagtgaaaaaaatagagaacattgagatgaaagggctttgggggattaatttttcttcataatacaaaactcttctcacttagggaactaaaa 44076629  T
Q  135 agttgtatt 143  Q
    | |||||||    
T  44076630 aattgtatt 44076638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 11976771 - 11976878
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttg-gggaactaaaaagttg 139  Q
    |||||||||||||||||| | |||| ||||||  || | ||||  |||||||| |||||||||||||| ||  | |||||||  ||||||||||||||||    
T  11976771 caagtgaaagaaatagaggacattgaaagggg--ggttatgagatgttaatttttcttcataatacaaaacatttctcatttaagggaactaaaaagttg 11976868  T
Q  140 tattggatga 149  Q
    ||||||||||    
T  11976869 tattggatga 11976878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 8827923 - 8827866
Alignment:
Q  86 gttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtatt 143  Q
    |||||||  |||||||||||||| ||||| |||||||||| |||||||||||||||||    
T  8827923 gttaattattcttcataatacaaaactctcctcatttgggaaactaaaaagttgtatt 8827866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 157
Target Start/End: Original strand, 45899349 - 45899443
Alignment:
Q  62 attggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattggatgacggttttg 157  Q
    ||||| |||||| |||||||||||| | | || |||||||||||||| | ||  || ||||||||||||||||| |||||||||| || |||||||    
T  45899349 attgggaggggagggctttgaggggcttagttttcttcataatacaaaa-tcccctaatttggggaactaaaaaattgtattggaggagggttttg 45899443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 16318549 - 16318655
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttg 139  Q
    |||||| ||||||||||  | | ||| || ||| |||||| ||||||||| || |||||||| ||||| || || ||||||||| ||||||||||| |||    
T  16318549 caagtggaagaaatagaagaaaatgggagaggagggctttcaggggttaacttttcttcatattacaaaaccctcctcatttggaggaactaaaaaattg 16318648  T
Q  140 tattgga 146  Q
    |||||||    
T  16318649 tattgga 16318655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 149
Target Start/End: Original strand, 21081275 - 21081391
Alignment:
Q  34 gaaggatcaagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgggg-aactaa 132  Q
    |||||| |||||| ||||||||||  | ||||  ||||||| | ||||  ||||| |||| ||||||||| |||| || || ||||||||||| |||| |    
T  21081275 gaaggagcaagtggaagaaatagatgacattgagaggggaatgttttggagggttcatttttcttcataaaacaaaaccctcctcatttggggtaactta 21081374  T
Q  133 aaagttgtattggatga 149  Q
    ||| |||||||||||||    
T  21081375 aaaattgtattggatga 21081391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 28175612 - 28175496
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgt 140  Q
    ||||| ||||||||||| | | ||| || ||| ||||||| | |||||| || |||||||||||||| |  || ||||||||| ||||||||||| ||||    
T  28175612 aagtggaagaaatagaggaaaatgggagaggagggctttgggaggttaacttttcttcataatacaaaatcctcctcatttggaggaactaaaaaattgt 28175513  T
Q  141 attggatgacggttttg 157  Q
    || ||| || |||||||    
T  28175512 ataggaggagggttttg 28175496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 173
Target Start/End: Original strand, 45823530 - 45823621
Alignment:
Q  84 gggttaatttgtcttcataatacaacactctgctcatttgggg-aactaaaaagttgtattggatgacggtttt-gtgggtttatatgaatt 173  Q
    ||||||| || |||||||||||||| ||||| ||||||||||| |||| |||| |||||||| | || |||||| | | |||||||||||||    
T  45823530 gggttaacttttcttcataatacaaaactctcctcatttggggaaacttaaaaattgtattgaaggagggttttggagagtttatatgaatt 45823621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 8828292 - 8828215
Alignment:
Q  95 tcttcataatacaacactctgctcatttggggaactaaaaagttgtattggatgacggttttgtgggtttatatgaatt 173  Q
    |||||||||||||| ||||| |||||||| |||||| |||| || || |||| || || |||| |||||||||||||||    
T  8828292 tcttcataatacaaaactctcctcatttgaggaactgaaaaattataatggagga-ggatttgggggtttatatgaatt 8828215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 147
Target Start/End: Complemental strand, 22891443 - 22891329
Alignment:
Q  34 gaaggatcaagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaa 132  Q
    |||||| |||||  ||||||||||| ||||||  ||||||  | |||| ||||||||||| ||| | |||||||| |  ||  |||||||| | ||||||    
T  22891443 gaaggaacaagtagaagaaatagagtatattgagaggggagagttttggggggttaatttttctccgtaatacaaaaaccttatcatttggagaaactaa 22891344  T
Q  133 aaagttgtattggat 147  Q
    |||||||||||||||    
T  22891343 aaagttgtattggat 22891329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 147
Target Start/End: Complemental strand, 22943107 - 22942993
Alignment:
Q  34 gaaggatcaagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaa 132  Q
    |||||| |||||  ||||||||||| ||||||  ||||||  | |||| ||||||||||| ||| | |||||||| |  ||  |||||||| | ||||||    
T  22943107 gaaggaacaagtagaagaaatagagtatattgagaggggagagttttggggggttaatttttctccgtaatacaaaaaccttatcatttggagaaactaa 22943008  T
Q  133 aaagttgtattggat 147  Q
    |||||||||||||||    
T  22943007 aaagttgtattggat 22942993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 173
Target Start/End: Complemental strand, 49668252 - 49668119
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttg-gggaactaaaaagttg 139  Q
    |||||| ||||||||||||| | ||| |||| | ||||||| | |||||| || |||||||||||  | || || |||||||  |||||||||||| |||    
T  49668252 caagtggaagaaatagagaaaaatgggagggtacggctttg-gaggttaacttttcttcataatattaaaccctcctcatttaagggaactaaaaaattg 49668154  T
Q  140 tattggatgacggtttt-gtgggtttatatgaatt 173  Q
    ||||||| || |||||| | ||||||| |||||||    
T  49668153 tattggaggagggttttggggggtttacatgaatt 49668119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 15498867 - 15498826
Alignment:
Q  116 ctcatttggggaactaaaaagttgtattggatgacggttttg 157  Q
    ||||||||||||||| |||| ||||||||||||| |||||||    
T  15498867 ctcatttggggaactcaaaaattgtattggatgagggttttg 15498826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 25843818 - 25843863
Alignment:
Q  83 ggggttaatttgtcttcataatacaacactctgctcatttggggaa 128  Q
    ||||||||||| || ||||||||||| ||||| |||||||||||||    
T  25843818 ggggttaatttttcatcataatacaaaactcttctcatttggggaa 25843863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 41 - 145
Target Start/End: Original strand, 33500452 - 33500557
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttg 139  Q
    |||||| ||||||||||| | | ||| || ||| |||||||||| ||||| ||  |||||||| |||| || || ||||||||| |||||||||||  ||    
T  33500452 caagtggaagaaatagaggaaaatgggagaggagggctttgaggagttaactttccttcataagacaaaaccctcctcatttggaggaactaaaaaaatg 33500551  T
Q  140 tattgg 145  Q
    ||||||    
T  33500552 tattgg 33500557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 368043 - 368086
Alignment:
Q  83 ggggttaatttgtcttcataatacaacactctgctcatttgggg 126  Q
    ||||||||||| |||||||||||||| || || |||||||||||    
T  368043 ggggttaatttttcttcataatacaaaaccctcctcatttgggg 368086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 42650602 - 42650685
Alignment:
Q  75 ggctttgaggggttaatttgtcttcataatacaacactctgctcatttgggg-aactaaaaagttgtattggatgacggttttg 157  Q
    ||||||| ||| || |||| |||||| |||| || || || ||||||||||| ||||||||| |||||||||| || |||||||    
T  42650602 ggctttgggggttttatttttcttcaaaatataaaaccctcctcatttgggggaactaaaaaattgtattggaggagggttttg 42650685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 3e-22; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 35 - 164
Target Start/End: Complemental strand, 32820384 - 32820256
Alignment:
Q  35 aaggatcaagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaa 134  Q
    ||||| |||||| |||||||| || | |||||||||||| || ||| |||||||||||| ||||| |||||||| | | | ||| |||||||||||||||    
T  32820384 aaggagcaagtggaagaaatatagtacattggaaggggagggtttt-aggggttaatttttcttcctaatacaaaattatcctcgtttggggaactaaaa 32820286  T
Q  135 agttgtattggatgacggttttgtgggttt 164  Q
    ||||||||||||  | ||||||||||||||    
T  32820285 agttgtattggagaagggttttgtgggttt 32820256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 42113113 - 42113002
Alignment:
Q  34 gaaggatcaagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaa 133  Q
    |||||| |||||| |||||||||||   ||||| || ||| || |||| ||||||||||| |||||||||||| | ||||| ||||||||||||||||||    
T  42113113 gaaggagcaagtggaagaaatagagtccattgggagagga-ggttttggggggttaatttttcttcataatactaaactctcctcatttggggaactaaa 42113015  T
Q  134 aagttgtattgga 146  Q
    |||||||||||||    
T  42113014 aagttgtattgga 42113002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 173
Target Start/End: Complemental strand, 38505483 - 38505349
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcattt-ggggaactaaaaagttg 139  Q
    |||||| ||||||||||| | | ||| |||||| ||||||| |||||||| || |||||||||||||| || || ||||||| ||||||||| ||| |||    
T  38505483 caagtggaagaaatagaggaaaatgggaggggagggctttggggggttaacttttcttcataatacaaaaccctcctcatttgggggaactataaaattg 38505384  T
Q  140 tattggatgacggtttt-gtgggtttatatgaatt 173  Q
    ||||||| || |||||| | |||||||||||||||    
T  38505383 tattggaggagggttttggagggtttatatgaatt 38505349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 4058287 - 4058171
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgt 140  Q
    ||||| ||||||||||| | | ||||||  || ||||||| |||||||| || |||||||||||||| || || ||| ||||| | ||||||||| ||||    
T  4058287 aagtggaagaaatagaggaaaatggaagatgagggctttggggggttaacttttcttcataatacaaaaccctcctcgtttggagcaactaaaaaattgt 4058188  T
Q  141 attggatgacggttttg 157  Q
    ||||||||| |||||||    
T  4058187 attggatgagggttttg 4058171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 13697262 - 13697328
Alignment:
Q  89 aatttgtcttcataatacaacactctgctcatttgggg-aactaaaaagttgtattggatgacggtt 154  Q
    ||||| |||||||||||||| || || ||||||||||| |||||||||||||||||||| |||||||    
T  13697262 aatttttcttcataatacaaaaccctcctcatttgggggaactaaaaagttgtattggaagacggtt 13697328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 15749063 - 15748989
Alignment:
Q  76 gctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgtattggatga 149  Q
    |||||| |||||||| || |||||||||||||| || || ||||||||| ||||||||||| |||||||||||||    
T  15749063 gctttggggggttaacttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggatga 15748989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 6746691 - 6746612
Alignment:
Q  68 aggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcattt-ggggaactaaaaagttgtattgga 146  Q
    |||||| ||||||| ||||||||||| |||| ||||||||| ||| | ||||||| |||||||| |||| ||||||||||    
T  6746691 aggggagggctttggggggttaatttttctttataatacaaaactttcctcatttgggggaactcaaaaattgtattgga 6746612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 23551585 - 23551695
Alignment:
Q  35 aaggatcaagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaa 134  Q
    ||||| |||||| |||||||| || | ||||| |||||| || ||| |||| ||| ||| ||||||||||||||  | || ||||||| |||||||||||    
T  23551585 aaggaacaagtggaagaaataaaggacattgggaggggagggatttaaggg-ttagtttttcttcataatacaaagccctcctcattttgggaactaaaa 23551683  T
Q  135 agttgtattgga 146  Q
     |||||||||||    
T  23551684 ggttgtattgga 23551695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 173
Target Start/End: Complemental strand, 33872232 - 33872125
Alignment:
Q  68 aggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcattt-ggggaactaaaaagttgtattggatgacggtttt--gtgggttt 164  Q
    |||||| ||||||| |||||||| || |||||||||||| | || || ||||||| |||||||||| || |||||||||| || ||||||  | ||||||    
T  33872232 aggggagggctttg-ggggttaacttttcttcataatactaaaccctcctcatttgggggaactaacaaattgtattggaggagggtttttggagggttt 33872134  T
Q  165 atatgaatt 173  Q
    |||||||||    
T  33872133 atatgaatt 33872125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 144
Target Start/End: Complemental strand, 38233874 - 38233781
Alignment:
Q  51 aaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattg 144  Q
    |||||||| | ||||||| | || |||||||   ||||||||| |||| ||| ||||| || || |||||||| ||||||||||||||||||||    
T  38233874 aaatagagtacattggaatgagagggctttggaaggttaatttttcttgatattacaaaacccttctcatttgaggaactaaaaagttgtattg 38233781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 143
Target Start/End: Original strand, 43741639 - 43741740
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggg-gaactaaaaagttg 139  Q
    |||||||||||||||||| | | ||| |||||| || |||| ||  |||| || |||||||||||||| ||||| |||||||||| ||||| |||| |||    
T  43741639 caagtgaaagaaatagaggaaaatgggaggggagggttttgtgg--ttaacttttcttcataatacaaaactctcctcatttgggagaactcaaaaattg 43741736  T
Q  140 tatt 143  Q
    ||||    
T  43741737 tatt 43741740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 45940507 - 45940443
Alignment:
Q  83 ggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgtattgga 146  Q
    |||||||| || |||||||||||||| || || ||||||||| ||||||||||| ||||||||||    
T  45940507 ggggttaacttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattgga 45940443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 39856511 - 39856405
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgta 141  Q
    ||||| ||||||||||| |||||||||||  || | |||| | ||||||||| | || ||||||||| |   | ||||||| || |||||||||||||||    
T  39856511 aagtggaagaaatagagtatattggaaggaaaaagttttgggaggttaattttt-ttaataatacaaaatcatcctcatttcggaaactaaaaagttgta 39856413  T
Q  142 ttggatga 149  Q
    ||||||||    
T  39856412 ttggatga 39856405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 157
Target Start/End: Complemental strand, 42267110 - 42267039
Alignment:
Q  86 gttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattggatgacggttttg 157  Q
    |||||||| |||||||||||||| |||||  |||||||| ||| | |||| |||||||||| || |||||||    
T  42267110 gttaatttttcttcataatacaaaactcttatcatttggagaattcaaaaattgtattggaggaaggttttg 42267039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 17884298 - 17884219
Alignment:
Q  83 ggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattggatgacggttttgtgggttt 164  Q
    ||||||||||| |||||||||||||| |||   || ||||| ||||||||||| |||||||||| || || ||||| |||||    
T  17884298 ggggttaatttttcttcataatacaaaactt--cttatttgaggaactaaaaaattgtattggaggagggctttgttggttt 17884219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 19791667 - 19791728
Alignment:
Q  85 ggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattgga 146  Q
    |||||| || |||||||||||| | || |  |||||||||||||||||||| ||||||||||    
T  19791667 ggttaacttttcttcataatactaaacccacctcatttggggaactaaaaaattgtattgga 19791728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 31055382 - 31055423
Alignment:
Q  116 ctcatttggggaactaaaaagttgtattggatgacggttttg 157  Q
    |||||||||||||||||||| |||||||||| || |||||||    
T  31055382 ctcatttggggaactaaaaaattgtattggaggagggttttg 31055423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 46442649 - 46442746
Alignment:
Q  49 agaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattgga 146  Q
    |||||||||| | | ||| |||||| ||||| | |||||||| || |||||||||||||| |  ||  ||||||||||| ||||||| |||| |||||    
T  46442649 agaaatagaggaaaatgggaggggagggcttcggggggttaacttttcttcataatacaaaatcctcatcatttggggagctaaaaaattgttttgga 46442746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 16805715 - 16805599
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgt 140  Q
    ||||| |||||| |||| | | ||| || ||| ||||||| ||| |||| || |||||||||||||| ||  |  |||||||| ||||||||||| ||||    
T  16805715 aagtggaagaaagagaggaaaatgggagaggagggctttgggggtttaacttttcttcataatacaaaaccttcttcatttggaggaactaaaaaattgt 16805616  T
Q  141 attggatgacggttttg 157  Q
    |||||| || |||||||    
T  16805615 attggaggagggttttg 16805599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 23466116 - 23466040
Alignment:
Q  71 ggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttg-gggaactaaaaagttgtattgga 146  Q
    ||||||||||| |||||| |||| |||| ||||||||| || || |||||||| ||||||| | || ||||||||||    
T  23466116 ggaaggctttggggggttcatttttctttataatacaaaaccctcctcatttgagggaactcacaaattgtattgga 23466040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 157
Target Start/End: Original strand, 42253893 - 42254007
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgt 140  Q
    ||||| ||||||||||| | | ||  || |||||||||| ||||||||| || |||||||||||||| || || ||||||||| ||||||||||| || |    
T  42253893 aagtggaagaaatagaggaaaatgagagaggaaggcttt-aggggttaactt-tcttcataatacaaaaccctcctcatttggaggaactaaaaaattat 42253990  T
Q  141 attggatgacggttttg 157  Q
    |||| | || |||||||    
T  42253991 attgaaggagggttttg 42254007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 2826342 - 2826279
Alignment:
Q  95 tcttcataatacaacactctgctcatttgggg-aactaaaaagttgtattggatgacggttttg 157  Q
    |||||||||||| | || || ||||||||||| ||||||||| |||||||||| || |||||||    
T  2826342 tcttcataatactaaaccctcctcatttgggggaactaaaaaattgtattggaggagggttttg 2826279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 42622336 - 42622399
Alignment:
Q  83 ggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattgga 146  Q
    ||||||||| | ||||||| |||||| |   | ||||||| |||||||||||||||||||||||    
T  42622336 ggggttaatatttcttcatcatacaaaatcattctcatttagggaactaaaaagttgtattgga 42622399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 43741322 - 43741385
Alignment:
Q  84 gggttaatttgtcttcataatacaacactctgctcatttgggg-aactaaaaagttgtattgga 146  Q
    |||||||||| | |||||||||||| ||  |  |||||||||| ||||||||||||||||||||    
T  43741322 gggttaattttttttcataatacaaaaccttcatcatttggggtaactaaaaagttgtattgga 43741385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 46509238 - 46509312
Alignment:
Q  69 ggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattg 144  Q
    |||||||| ||||||||||| |||| ||||||||||| || || || ||||||| |  ||||||||| ||||||||    
T  46509238 ggggaaggatttgaggggtttatttttcttcataatataaaac-ctcctcatttagaaaactaaaaaattgtattg 46509312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 41 - 156
Target Start/End: Original strand, 39193863 - 39193979
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcattt-ggggaactaaaaagttg 139  Q
    |||||| ||||||||||| | ||||| |||||| ||||||| ||||||||||| ||||||||||| || || ||  |||||| |||||||||||||||||    
T  39193863 caagtggaagaaatagagtacattgggaggggagggctttggggggttaatttttcttcataatataaaaccctcttcatttgggggaactaaaaagttg 39193962  T
Q  140 tattggatgacggtttt 156  Q
    ||||||| || ||||||    
T  39193963 tattggaggagggtttt 39193979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 79762 - 79645
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcattt-ggggaactaaaaagttg 139  Q
    |||||| ||||||||||| | | ||| |||||| ||||||| |||||||  || |||||||||||| | || || ||||||| ||||||||||||| |||    
T  79762 caagtggaagaaatagaggaaaatgggaggggagggctttggggggttacgttttcttcataatactaaaccctcctcatttgggggaactaaaaaattg 79663  T
Q  140 tattggatgacggttttg 157  Q
    ||||||| || |||||||    
T  79662 tattggaggagggttttg 79645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 43239607 - 43239710
Alignment:
Q  46 gaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattgg 145  Q
    ||||||||||||| | | ||| |||||| ||||||  |||||||| || ||||||||| |||| |  || ||||||||||||| |||||| |||||||||    
T  43239607 gaaagaaatagaggaaaatgggaggggagggctttatggggttaacttttcttcataacacaaaagcctcctcatttggggaattaaaaaattgtattgg 43239706  T
Q  146 atga 149  Q
    ||||    
T  43239707 atga 43239710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 8228466 - 8228574
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgt 140  Q
    |||||| ||||||||||||| | ||| | || |  | ||||||||||||| || | |||||||||||| || ||  ||||||||||||||||||| | ||    
T  8228466 caagtggaagaaatagagaaaaatgggatggaagtgatttgaggggttaactttttttcataatacaaaaccctcatcatttggggaactaaaaaatcgt 8228565  T
Q  141 attggatga 149  Q
    |||||||||    
T  8228566 attggatga 8228574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 5911569 - 5911471
Alignment:
Q  45 tgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattg 144  Q
    ||||||||||| |||| ||||| ||| |  |||||||||||||| |||| |||| | |||| || || || |||||||||||||||||||| ||||||||    
T  5911569 tgaaagaaatacagaaaattgggaggagg-ggctttgaggggtttatttttctttaaaatataaaaccctcctcatttggggaactaaaaaattgtattg 5911471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 68 - 142
Target Start/End: Original strand, 31149872 - 31149946
Alignment:
Q  68 aggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtat 142  Q
    ||||| || ||||| ||||||||||| ||||| |||||||| |   | |||||||||||||||||||||||||||    
T  31149872 aggggtagactttggggggttaatttttcttcctaatacaaaatcatcctcatttggggaactaaaaagttgtat 31149946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 21174006 - 21173890
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttg 139  Q
    |||||| ||||||||||  | | ||| || ||| ||||||| |||||||| || |||||||||||||| || || ||||||||| ||||||||||| ||     
T  21174006 caagtggaagaaatagaagaaaatgggagaggagggctttg-ggggttaacttttcttcataatacaaaaccctcctcatttggaggaactaaaaaatta 21173908  T
Q  140 tattggatgacggttttg 157  Q
    ||||||| || |||||||    
T  21173907 tattggaggagggttttg 21173890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 23932705 - 23932601
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgt 140  Q
    ||||| ||||||||||| | | ||  || ||| ||||||| |||||||| || |||||||||||||| || || ||||||||| ||||||||||| ||||    
T  23932705 aagtggaagaaatagaggaaaatgagagaggagggctttg-ggggttaacttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgt 23932607  T
Q  141 attgga 146  Q
    ||||||    
T  23932606 attgga 23932601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 26772758 - 26772674
Alignment:
Q  74 aggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgtattggatgacggttttg 157  Q
    |||||||| | |||||| || |||||||||||||| || ||  |||||||  ||||||||||| ||||||||||||| |||||||    
T  26772758 aggctttgggaggttaacttttcttcataatacaaaaccctcatcatttgaaggaactaaaaaattgtattggatgagggttttg 26772674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 4166755 - 4166689
Alignment:
Q  77 ctttgaggggttaatttgtcttcataatacaacactctgctcatttg-gggaactaaaaagttgtat 142  Q
    ||||| ||||| ||||| |||||||||||||| ||||| |||||| |  ||||||||||||||||||    
T  4166755 ctttggggggtaaatttttcttcataatacaaaactcttctcattcgaaggaactaaaaagttgtat 4166689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 27085350 - 27085396
Alignment:
Q  110 actctgctcatttggggaactaaaaagttgtattggatgacggtttt 156  Q
    ||||| |||||||||||||||||||| |||||||||| || ||||||    
T  27085350 actcttctcatttggggaactaaaaaattgtattggaggatggtttt 27085396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 31297421 - 31297371
Alignment:
Q  116 ctcatttggggaactaaaaagttgtattggatgacggttttgtgggtttat 166  Q
    |||||||||||||||||||| |||||||||| || ||||||| ||| ||||    
T  31297421 ctcatttggggaactaaaaaattgtattggaggagggttttggggggttat 31297371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 68 - 157
Target Start/End: Original strand, 44879506 - 44879595
Alignment:
Q  68 aggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattggatgacggttttg 157  Q
    ||||||||| |||  |||||  |||| ||||||| || ||| | ||| ||||||| |||||||||||| |||||||||| || |||||||    
T  44879506 aggggaaggtttttgggggtgtatttttcttcatgattcaaaattctcctcatttagggaactaaaaaattgtattggaggaaggttttg 44879595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 68 - 157
Target Start/End: Complemental strand, 44880415 - 44880326
Alignment:
Q  68 aggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattggatgacggttttg 157  Q
    ||||||||| |||  |||||  |||| ||||||| || ||| | ||| ||||||| |||||||||||| |||||||||| || |||||||    
T  44880415 aggggaaggtttttgggggtgtatttttcttcatgattcaaaattctcctcatttagggaactaaaaaattgtattggaggaaggttttg 44880326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 28416272 - 28416193
Alignment:
Q  77 ctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattggatgacggttttg 157  Q
    ||||| ||||||| ||| |||||| |||| || || || || ||||||||||||| ||| ||||||||||||| |||||||    
T  28416272 ctttggggggttatttt-tcttcaaaatataaaaccctccttatttggggaactacaaaattgtattggatgagggttttg 28416193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 1840300 - 1840241
Alignment:
Q  88 taatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgtattgga 146  Q
    |||||| ||||||| |||||| || || ||||||||| ||||||||| ||||||||||||    
T  1840300 taatttttcttcatgatacaaaaccctcctcatttggaggaactaaatagttgtattgga 1840241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 4e-21; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 41 - 155
Target Start/End: Original strand, 4003360 - 4003475
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcattt-ggggaactaaaaagttg 139  Q
    |||||| ||||||||||| | | ||| |||||| ||||||| ||||||||||| |||||||||||||| ||||| ||||||| |||||||| |||| |||    
T  4003360 caagtggaagaaatagaggaaaatgggaggggagggctttggggggttaatttttcttcataatacaaaactctcctcatttgggggaactcaaaaattg 4003459  T
Q  140 tattggatgacggttt 155  Q
    ||||||| || |||||    
T  4003460 tattggaggagggttt 4003475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 44 - 157
Target Start/End: Original strand, 34757540 - 34757654
Alignment:
Q  44 gtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgtat 142  Q
    ||||||||||||||||| | ||| || ||| ||||||| ||||||||  | |||||||||||||| || || ||||||||| ||||||||||| ||||||    
T  34757540 gtgaaagaaatagagaaaaatgggagaggagggctttggggggttaacctttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtat 34757639  T
Q  143 tggatgacggttttg 157  Q
    |||| || |||||||    
T  34757640 tggaggagggttttg 34757654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 156
Target Start/End: Original strand, 37194200 - 37194315
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgt 140  Q
    ||||| ||||||||||| | | ||||||  || ||||||| |||||||| || |||||||||||||| || || ||||||||| ||||||||||| ||||    
T  37194200 aagtggaagaaatagaggaaaatggaagacgagggctttggggggttaacttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgt 37194299  T
Q  141 attggatgacggtttt 156  Q
    |||||| || ||||||    
T  37194300 attggaggagggtttt 37194315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 143
Target Start/End: Complemental strand, 16519244 - 16519135
Alignment:
Q  34 gaaggatcaagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgggg-aactaa 132  Q
    |||||| |||||| ||||||||||| | |||||| ||||| |||||||  ||||| |||| |||||||||||||| |  || ||||||||||| ||||||    
T  16519244 gaaggagcaagtggaagaaatagagtacattgga-ggggagggctttggtgggttgatttttcttcataatacaaaatcctcctcatttggggaaactaa 16519146  T
Q  133 aaagttgtatt 143  Q
    |||||||||||    
T  16519145 aaagttgtatt 16519135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 1364765 - 1364882
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttg 139  Q
    |||||| ||||||||||  | | ||| || ||| ||||||| |||||||| || |||||||||||||| || || ||||||||| ||||||||||| |||    
T  1364765 caagtggaagaaatagaagaaaatgggagaggagggctttggggggttaacttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattg 1364864  T
Q  140 tattggatgacggttttg 157  Q
    ||||||| || |||||||    
T  1364865 tattggaggagggttttg 1364882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 11515011 - 11515093
Alignment:
Q  76 gctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgtattggatgacggttttg 157  Q
    |||||| |||||||| || |||||||||||||| || || ||||||||| ||||||||||| |||||||||| || |||||||    
T  11515011 gctttggggggttaacttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggttttg 11515093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 15555494 - 15555389
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttg 139  Q
    |||||| ||||||||||  | | ||| || ||| ||||||| ||||||||||| |||||||||||||| || || ||||||||| ||||||||||| |||    
T  15555494 caagtggaagaaatagaagaaaatgggagaggagggctttg-ggggttaatttttcttcataatacaaaacccttctcatttggaggaactaaaaaattg 15555396  T
Q  140 tattgga 146  Q
    |||||||    
T  15555395 tattgga 15555389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 149
Target Start/End: Original strand, 11949881 - 11949945
Alignment:
Q  84 gggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattggatga 149  Q
    ||||| |||| |||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||    
T  11949881 gggtttatttttcttcataatacaaaactcttctcatttggggaactaaaaa-ttgcattggatga 11949945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 160
Target Start/End: Original strand, 21626090 - 21626175
Alignment:
Q  76 gctttgaggggttaatttgtcttcataatacaacactctgctcatttgggg-aactaaaaagttgtattggatgacggttttgtgg 160  Q
    |||||| |||||||| || |||||||||||||| ||  | ||||||||||| ||||||||||||||||||||  | ||||||||||    
T  21626090 gctttggggggttaacttttcttcataatacaaaaccatcctcatttgggggaactaaaaagttgtattggagaagggttttgtgg 21626175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 34 - 157
Target Start/End: Original strand, 21834866 - 21834990
Alignment:
Q  34 gaaggatcaagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcattt-ggggaactaa 132  Q
    |||||| |||||| |||||| |||| | || || | || | |||||||  || ||||||| ||||||||||| || ||||| ||||||| ||||||||||    
T  21834866 gaaggagcaagtggaagaaacagaggacatcgggacggaagggctttggaggattaatttttcttcataatataaaactctcctcatttaggggaactaa 21834965  T
Q  133 aaagttgtattggatgacggttttg 157  Q
    ||||||||||| || || |||||||    
T  21834966 aaagttgtattagaggagggttttg 21834990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 78 - 157
Target Start/End: Original strand, 26905773 - 26905853
Alignment:
Q  78 tttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgtattggatgacggttttg 157  Q
    ||||||||||||| || ||||||| |||||| || || ||||||||| ||||||||||| |||||||||| || |||||||    
T  26905773 tttgaggggttaacttttcttcatgatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggttttg 26905853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 16625930 - 16625863
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaa 108  Q
    |||||| ||||||||||| | ||||| |||||| ||||||| ||||||||||| ||||||| ||||||    
T  16625930 caagtggaagaaatagagtacattgggaggggagggctttggggggttaatttttcttcatgatacaa 16625863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 40211989 - 40212052
Alignment:
Q  95 tcttcataatacaacactctgctcatttgg-ggaactaaaaagttgtattggatgacggttttg 157  Q
    |||||||||||||| || || ||||||||| ||||||||||| ||||||||||||| |||||||    
T  40211989 tcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggatgagggttttg 40212052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 41 - 173
Target Start/End: Original strand, 31082748 - 31082881
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgggg-aactaaaaagttg 139  Q
    |||||| ||||||||||| | | ||| |||||| ||||||| |||||||| || ||||| |||||| | || || ||| ||||||| ||||||||  |||    
T  31082748 caagtggaagaaatagaggaaaatgggaggggagggctttg-ggggttaacttttcttcgtaatactaaaccctcctcgtttgggggaactaaaatattg 31082846  T
Q  140 tattggatgacggtttt-gtgggtttatatgaatt 173  Q
    ||||||| || |||||| | |||||||||||||||    
T  31082847 tattggaggagggttttggggggtttatatgaatt 31082881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 11522253 - 11522212
Alignment:
Q  116 ctcatttggggaactaaaaagttgtattggatgacggttttg 157  Q
    ||||||||||||||||||||||||||||||| || |||||||    
T  11522253 ctcatttggggaactaaaaagttgtattggaggagggttttg 11522212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 28539547 - 28539466
Alignment:
Q  68 aggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattggatga 149  Q
    |||||| |||| || || ||||| || |||||||||| | | ||||| ||||||||||| |||||||| |||||||||||||    
T  28539547 aggggagggctctggggagttaacttttcttcataatgctaaactctcctcatttgggggactaaaaaattgtattggatga 28539466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 30072557 - 30072492
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatac 106  Q
    |||||| ||||||||||| | | ||| |||||| |||||||||||||||| || ||||||||||||    
T  30072557 caagtggaagaaatagaggaaaatgggaggggagggctttgaggggttaacttttcttcataatac 30072492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 35550303 - 35550201
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgta 141  Q
    ||||| ||||||||||| | | |||||| ||| ||||| |  ||||||| |  |||||||||||| | || || ||||||||||||||||||||||||||    
T  35550303 aagtggaagaaatagaggaaaatggaagtggagggcttgg--gggttaactgttcttcataatactaaaccctcctcatttggggaactaaaaagttgta 35550206  T
Q  142 ttgga 146  Q
     ||||    
T  35550205 ctgga 35550201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 41100213 - 41100148
Alignment:
Q  82 aggggttaatttgtct-tcataatacaacactctgctcatttggggaactaaaaagttgtattgga 146  Q
    ||||||||| || ||| ||||||||||| || || |||||||||||||||||||| ||||||||||    
T  41100213 aggggttaacttttctatcataatacaaaaccctcctcatttggggaactaaaaaattgtattgga 41100148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 41656748 - 41656691
Alignment:
Q  84 gggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgta 141  Q
    |||||||||| |||||||||||||| ||||| |||||| |||||||| |||| |||||    
T  41656748 gggttaatttttcttcataatacaaaactctcctcattgggggaactcaaaaattgta 41656691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 6656050 - 6656169
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaa--aagt 137  Q
    |||||| ||||||||||  | | ||| || ||| ||||||| |||||||| || |||||||||||||| || || ||||||||| |||||||||  || |    
T  6656050 caagtggaagaaatagaagaaaatgggagaggagggctttggggggttaacttttcttcataatacaaaaccctcctcatttggaggaactaaaacaaat 6656149  T
Q  138 tgtattggatgacggttttg 157  Q
    ||||||||| || |||||||    
T  6656150 tgtattggaggagggttttg 6656169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 39819860 - 39819935
Alignment:
Q  70 gggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattgga 146  Q
    ||||| |||||| |||||| |||| ||||| |||||||| |  || |||||||||||||||||||| ||||||||||    
T  39819860 gggaatgctttg-ggggttcatttttcttcctaatacaaaatcctcctcatttggggaactaaaaaattgtattgga 39819935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 43572651 - 43572587
Alignment:
Q  83 ggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgtattgga 146  Q
    |||||||| || |||||||||||||| || || ||||||||| ||||||||||| ||||||||||    
T  43572651 ggggttaacttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattgga 43572587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 157
Target Start/End: Complemental strand, 26599388 - 26599281
Alignment:
Q  51 aaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcattt-ggggaactaaaaagttgtattggatga 149  Q
    |||||||||  ||||| |||| | ||||||| |||||| |||| ||||||||||||||  | || ||||||| |||||||| | || |||||||||| ||    
T  26599388 aaatagagagcattgggagggaagggctttggggggttcatttttcttcataatacaattccctcctcatttgggggaactcacaaattgtattggagga 26599289  T
Q  150 cggttttg 157  Q
     |||||||    
T  26599288 gggttttg 26599281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 30523222 - 30523301
Alignment:
Q  84 gggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattggatgacggttttgtgggtt 163  Q
    ||||||| || |||||||||||||| |  || || ||||||||||||||||| |||||||||| || | ||||| |||||    
T  30523222 gggttaaattttcttcataatacaaaatccttctaatttggggaactaaaaaattgtattggaggaggattttgggggtt 30523301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 43190686 - 43190584
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgt 140  Q
    ||||| ||||||||||| | | ||| |||||| || ||||||||||||| || |||||||||||||| |||||  |||||||| |||| | |||| ||||    
T  43190686 aagtggaagaaatagaggaaaatgggaggggaggg-tttgaggggttaacttttcttcataatacaaaactctcatcatttggaggaaatcaaaaattgt 43190588  T
Q  141 attg 144  Q
    ||||    
T  43190587 attg 43190584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 35412346 - 35412280
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaa 108  Q
    ||||| || |||||||| | |||||||  ||| ||||||| ||||||||||| ||||||||||||||    
T  35412346 aagtggaaaaaatagaggacattggaaaaggagggctttggggggttaatttttcttcataatacaa 35412280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 13018626 - 13018522
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgt 140  Q
    ||||| ||||||| ||| | | ||| || ||| ||||||| || ||||| || |||||||||||||| || || ||||||||| |||||||||||  |||    
T  13018626 aagtggaagaaatggaggaaaatgggagaggagggctttggggagttaacttttcttcataatacaaaaccctcctcatttggaggaactaaaaaaatgt 13018527  T
Q  141 attgg 145  Q
    |||||    
T  13018526 attgg 13018522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 3254643 - 3254682
Alignment:
Q  116 ctcatttggggaactaaaaagttgtattggatgacggttt 155  Q
    |||||||||||||||||||| ||| ||||||||| |||||    
T  3254643 ctcatttggggaactaaaaaattgcattggatgagggttt 3254682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 31584878 - 31584811
Alignment:
Q  77 ctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattg 144  Q
    |||||||||| | |||| |||||| |||| || || || |||||||||||||||||||| || |||||    
T  31584878 ctttgaggggcttatttttcttcaaaatataaaaccctcctcatttggggaactaaaaaattatattg 31584811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 155
Target Start/End: Complemental strand, 43497008 - 43496895
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgt 140  Q
    ||||||||||||||| || | | ||| || ||| ||||||| ||||||||||| |||| ||||||||| ||||||||||||||||||||| |||| ||||    
T  43497008 caagtgaaagaaataaaggaaaatgggagaggagggctttg-ggggttaatttttcttaataatacaaaactctgctcatttggggaacttaaaaattgt 43496910  T
Q  141 attggatgacggttt 155  Q
    |||||| || |||||    
T  43496909 attggaggagggttt 43496895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 10437918 - 10438035
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcattt-ggggaactaaaaagttg 139  Q
    |||||| ||||||||||||| | ||| |||||| | ||||| |||||||| || |||| ||||||||| |  || ||||||| | |||||||||||||||    
T  10437918 caagtggaagaaatagagaaaaatgggaggggaggtctttggggggttaacttttctttataatacaaaatcctcctcatttagaggaactaaaaagttg 10438017  T
Q  140 tattggatgacggttttg 157  Q
    ||||||| || |||||||    
T  10438018 tattggaggagggttttg 10438035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 157
Target Start/End: Original strand, 10842978 - 10843093
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgt 140  Q
    ||||| ||||||||||| | | ||| || ||| ||||||| |||||||| || |||||||||||||| || || ||||||||| ||||||||||| ||||    
T  10842978 aagtggaagaaatagaggaaaatgggagaggagggctttg-ggggttaacttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgt 10843076  T
Q  141 attggatgacggttttg 157  Q
    |||| | ||||||||||    
T  10843077 attgaaggacggttttg 10843093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 68 - 173
Target Start/End: Complemental strand, 38568489 - 38568382
Alignment:
Q  68 aggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcattt-ggggaactaaaaagttgtattggatgacggtttt-gtgggttta 165  Q
    |||||| ||||||| |||||||| || |||||||||||| | || || ||||||| ||||||||||||| || ||||||| || |||||| | |||||||    
T  38568489 aggggagggctttggggggttaacttttcttcataatactaaaccctcctcatttgggggaactaaaaaattatattggaggagggttttggggggttta 38568390  T
Q  166 tatgaatt 173  Q
    ||||||||    
T  38568389 tatgaatt 38568382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 41 - 140
Target Start/End: Original strand, 15974272 - 15974372
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttg-gggaactaaaaagttg 139  Q
    |||||| ||||||||||||| | ||| |||| |||||||||  ||||||| || |||||||||||| | ||||| |||||||| | |||||||||| |||    
T  15974272 caagtggaagaaatagagaaaaatgggagggaaaggctttggagggttaacttttcttcataatactatactctcctcatttgagagaactaaaaaattg 15974371  T
Q  140 t 140  Q
    |    
T  15974372 t 15974372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 19389924 - 19389861
Alignment:
Q  83 ggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattgga 146  Q
    |||||| |||| |||||||||||||| |  || |||||||||||||||||||| ||||||||||    
T  19389924 ggggttcatttatcttcataatacaaaatcctcctcatttggggaactaaaaaattgtattgga 19389861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 10955839 - 10955733
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcattt-ggggaactaaaaagttg 139  Q
    |||||| ||||||||||||| | ||||| | |  ||||||| |||||||| || || ||||||||||| || || ||||||| ||||||||||||  |||    
T  10955839 caagtggaagaaatagagaaaaatggaaagagggggctttggggggttaacttttcatcataatacaaaaccctcctcatttgggggaactaaaagattg 10955740  T
Q  140 tattgga 146  Q
    |||||||    
T  10955739 tattgga 10955733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 35683622 - 35683516
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttg 139  Q
    |||||| ||||||||||  | | ||| || ||| ||||| | |||||||| || |||||||||||||| || || ||||||||| ||||||||||| |||    
T  35683622 caagtggaagaaatagaagaaaatgggagaggagggcttcggggggttaacttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattg 35683523  T
Q  140 tattgga 146  Q
    |||||||    
T  35683522 tattgga 35683516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 5772868 - 5772752
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttg 139  Q
    |||||| ||||||||||  | | ||| || ||| ||||||| |||||||| || |||||||||||||| || || ||||||||| |||| |||||| |||    
T  5772868 caagtggaagaaatagaagaaaatgggagaggagggctttg-ggggttaacttttcttcataatacaaaaccctcctcatttggaggaattaaaaaattg 5772770  T
Q  140 tattggatgacggttttg 157  Q
    ||||||| || |||||||    
T  5772769 tattggaggagggttttg 5772752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 142
Target Start/End: Original strand, 6044478 - 6044566
Alignment:
Q  51 aaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtat 142  Q
    |||||||  ||||| | |||||| ||||||||| ||||||||| ||||||||||| || ||||  || ||||||||||||||||| ||||||    
T  6044478 aaatagacgatattaggaggggatggctttgagaggttaatttttcttcataatagaaaactc--ct-atttggggaactaaaaaattgtat 6044566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 156
Target Start/End: Original strand, 8943979 - 8944094
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttg 139  Q
    |||||||||||||||||| | | | ||||||||  |||||||||||||||  | | |||||||||| | ||  | ||||||||| ||||||||||| |||    
T  8943979 caagtgaaagaaatagaggaaaatagaaggggagagctttgaggggttaaccttttttcataatactaaaccttcctcatttggaggaactaaaaa-ttg 8944077  T
Q  140 tattggatgacggtttt 156  Q
    ||| |||||| ||||||    
T  8944078 tatcggatgagggtttt 8944094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 39649537 - 39649609
Alignment:
Q  75 ggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgtattgga 146  Q
    ||||||| |||||||| || ||||||| |||||| || || ||||||||| ||||||||||| ||||||||||    
T  39649537 ggctttggggggttaacttttcttcatgatacaaaaccctcctcatttggaggaactaaaaaattgtattgga 39649609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 21916415 - 21916344
Alignment:
Q  68 aggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcattt-ggggaactaaaaagtt 138  Q
    |||||| | ||||||||||||||||| ||||||| |||||| || || || |||| ||||||||||||||||    
T  21916415 aggggaggactttgaggggttaatttttcttcatgatacaaaaccctccttatttgggggaactaaaaagtt 21916344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 3925883 - 3925821
Alignment:
Q  87 ttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattggatga 149  Q
    ||||||| ||||||| ||| |  | ||| |||||||||||||||||||| |||||||||||||    
T  3925883 ttaatttttcttcatgatatagaattctcctcatttggggaactaaaaaattgtattggatga 3925821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 173
Target Start/End: Complemental strand, 9684937 - 9684796
Alignment:
Q  33 tgaaggatcaagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcattt-ggggaacta 131  Q
    ||||||| |||||||||||||||||  ||||||  |||||||||||||| |   || | || |||||||||||||| || || ||||||| |||||| ||    
T  9684937 tgaaggagcaagtgaaagaaatagatgatattgagaggggaaggctttg-gtatttcaattttcttcataatacaaaaccctcctcatttgggggaatta 9684839  T
Q  132 aaaagttgtattggatgacggtttt-gtgggtttatatgaatt 173  Q
    |||| ||| |||| | || |||||| | ||||||| |||||||    
T  9684838 aaaaattgcattgaaggaaggttttggggggtttacatgaatt 9684796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 22103491 - 22103556
Alignment:
Q  83 ggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattggatga 149  Q
    ||||||||||| |||||||||||||| || ||  ||||| ||||||||||||| |||||||| ||||    
T  22103491 ggggttaatttttcttcataatacaaaaccctcatcattcggggaactaaaaa-ttgtattgaatga 22103556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 29022600 - 29022666
Alignment:
Q  90 atttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattggatgacggtttt 156  Q
    |||| |||||| |||| || ||||| |||||||  ||||||||||| |||||||||| |||||||||    
T  29022600 atttttcttcaaaatataaaactctcctcatttaaggaactaaaaaattgtattggaggacggtttt 29022666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 5836869 - 5836924
Alignment:
Q  90 atttgtcttcataatacaacactctgctcattt-ggggaactaaaaagttgtattg 144  Q
    |||| |||||||||||||| ||||| ||||||| |||||||| |||| ||||||||    
T  5836869 atttttcttcataatacaaaactcttctcatttgggggaacttaaaaattgtattg 5836924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 36269675 - 36269781
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcattt-ggggaactaaaaagttg 139  Q
    |||||| ||||||||||||| | ||| |||||| ||||||| |||||||| || |||||||||||||| || || ||||||| ||||||||||||| |||    
T  36269675 caagtggaagaaatagagaaaaatgggaggggagggctttggggggttaacttttcttcataatacaaaaccctcctcatttgggggaactaaaaaattg 36269774  T
Q  140 tattgga 146  Q
    |||||||    
T  36269775 tattgga 36269781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 5584437 - 5584554
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttg 139  Q
    |||||| ||||||||||  | | ||| || ||| ||||||| |||||||| || |||||||||||||| || || ||||||||| ||||||||||| |||    
T  5584437 caagtggaagaaatagaagaaaatgggagaggagggctttggggggttaacttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattg 5584536  T
Q  140 tattggatgacggttttg 157  Q
    ||||||| || |||||||    
T  5584537 tattggaggagggttttg 5584554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 52068244 - 52068169
Alignment:
Q  83 ggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgtattggatgacggttttg 157  Q
    |||||||| || |||||||||||||| ||||| ||||||||| ||||||||||| |||||||||| || |||||||    
T  52068244 ggggttaacttttcttcataatacaaaactctcctcatttggaggaactaaaaaattgtattggaggagggttttg 52068169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 17760624 - 17760518
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttg 139  Q
    |||||| ||||||||||| | | ||| || |||  |||||| |||||||| || |||||||||||||| || || ||||||||| ||||||||||| |||    
T  17760624 caagtggaagaaatagaggaaaatgggagaggagagctttggggggttaacttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattg 17760525  T
Q  140 tattgga 146  Q
    |||||||    
T  17760524 tattgga 17760518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 29092020 - 29092124
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgt 140  Q
    ||||| ||||||||||| | | ||| || ||| ||||||| |||||||| || |||||||||||||| || || ||||||||| ||||||||||| ||||    
T  29092020 aagtggaagaaatagaggaaaatgggagaggagggctttg-ggggttaacttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgt 29092118  T
Q  141 attgga 146  Q
    ||||||    
T  29092119 attgga 29092124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 157
Target Start/End: Complemental strand, 41432887 - 41432798
Alignment:
Q  68 aggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattggatgacggttttg 157  Q
    |||||||||||||| ||| || |||| ||||||||||| || || || ||||||||||| ||| |||| |||||||||| || |||||||    
T  41432887 aggggaaggctttgggggtttcatttttcttcataatataaaaccctcctcatttgggggactcaaaatttgtattggaggagggttttg 41432798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 42333622 - 42333682
Alignment:
Q  86 gttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattgga 146  Q
    |||||||| |||||||||||||| || || ||||||| |||||||||| ||||||||||||    
T  42333622 gttaatttttcttcataatacaaaaccctcctcatttagggaactaaagagttgtattgga 42333682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 173
Target Start/End: Complemental strand, 5970572 - 5970446
Alignment:
Q  48 aagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgtattgga 146  Q
    ||||||||||| | ||| | |||||| ||||||| ||||||||||| ||||||||||| |  || ||  |  ||||| ||||||||||||||||||||||    
T  5970572 aagaaatagagtacattaggaggggagggctttg-ggggttaatttttcttcataatatagaaccctcattgtttggtggaactaaaaagttgtattgga 5970474  T
Q  147 tga-cggttttgtgggtttatatgaatt 173  Q
    |||  | ||||| |||||||||||||||    
T  5970473 tgagagtttttgagggtttatatgaatt 5970446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 156
Target Start/End: Complemental strand, 37649764 - 37649649
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgt 140  Q
    ||||| ||||||||||| | | ||| || ||| ||||||| || ||||| || |||| ||||||||| || || ||||||||| ||||||||||| ||||    
T  37649764 aagtggaagaaatagaggaaaatgggagaggagggctttggggtgttaacttttctttataatacaaaaccctcctcatttggaggaactaaaaaattgt 37649665  T
Q  141 attggatgacggtttt 156  Q
    |||||| || ||||||    
T  37649664 attggaggagggtttt 37649649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 173
Target Start/End: Original strand, 50225975 - 50226106
Alignment:
Q  44 gtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgtat 142  Q
    ||||||||||||||| | | || |||| ||||  |||| |||||||| || |||||||||||  | || || |||||||||  |||||||||| ||||||    
T  50225975 gtgaaagaaatagaggaaaatgaaaggcgaagattttggggggttaacttttcttcataatattaaacccttctcatttggaagaactaaaaaattgtat 50226074  T
Q  143 tggatga-cggttttgtgggtttatatgaatt 173  Q
    |||| || || ||||| |||||||||||||||    
T  50226075 tggaggagcgtttttgagggtttatatgaatt 50226106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 33579221 - 33579282
Alignment:
Q  95 tcttcataatacaacactctgctcatttggggaactaaaaagttgtattggatgacggtttt 156  Q
    |||| ||||||||| || || ||||||||||||||| ||||||||||||||| || ||||||    
T  33579221 tctttataatacaaaaccctcctcatttggggaactcaaaagttgtattggaggagggtttt 33579282  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 34154476 - 34154371
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgt 140  Q
    ||||| ||||||||||| | | || |||  || ||||||| |||||||| || |||||||||||||| ||  | ||||||||| ||||||||||| ||||    
T  34154476 aagtggaagaaatagaggaaaatgaaagatgagggctttggggggttaacttttcttcataatacaaaaccttcctcatttggaggaactaaaaaattgt 34154377  T
Q  141 attgga 146  Q
    ||||||    
T  34154376 attgga 34154371  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 17556601 - 17556732
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgggg-aactaaaaagttgt 140  Q
    ||||| ||||||||||| | ||||| ||| || ||||||| |||| | |||| |||||| |||| || || || ||||||||||| ||||||||| || |    
T  17556601 aagtggaagaaatagaggacattgggaggaga-ggctttggggggcttatttttcttcaaaatataaaaccctcctcatttgggggaactaaaaaattct 17556699  T
Q  141 attggatgacggtttt-gtgggtttatatgaat 172  Q
    |||||| || |||||| | ||||||||||||||    
T  17556700 attggaggagggttttggggggtttatatgaat 17556732  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 173
Target Start/End: Original strand, 33324600 - 33324699
Alignment:
Q  75 ggctttgaggggttaatttgtcttcataatacaacactctgctcatttg-gggaactaaaaagttgtattggatgacggtttt-gtgggtttatatgaat 172  Q
    ||||||| |||||||| || |||||||||||| | || || |||||||| |||||||||||| ||||||| || || |||||| | ||||||||||||||    
T  33324600 ggctttggggggttaacttttcttcataatactaaaccctcctcatttgagggaactaaaaa-ttgtattagaggagggttttagagggtttatatgaat 33324698  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 41817446 - 41817331
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgt 140  Q
    ||||| ||||||||||| | | ||| || ||| | ||||| |||||||| || |||||||||||||| || ||  |||||||| ||||||||||| ||||    
T  41817446 aagtggaagaaatagaggaaaatgggagaggaggactttg-ggggttaacttttcttcataatacaaaaccctcatcatttggaggaactaaaaaattgt 41817348  T
Q  141 attggatgacggttttg 157  Q
    |||||| || |||||||    
T  41817347 attggaggagggttttg 41817331  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 139
Target Start/End: Complemental strand, 33854980 - 33854889
Alignment:
Q  48 aagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttg 139  Q
    ||||||||||| ||||| | ||||||  | ||||  |||||||||| |||||||||||||| || ||  ||| ||||| |||||||||||||    
T  33854980 aagaaatagaggatattaggaggggagtgttttgcagggttaatttttcttcataatacaaaaccctcttcaattgggaaactaaaaagttg 33854889  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 139
Target Start/End: Original strand, 33925942 - 33926033
Alignment:
Q  48 aagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttg 139  Q
    ||||||||||| ||||| | ||||||  | ||||  |||||||||| |||||||||||||| || ||  ||| ||||| |||||||||||||    
T  33925942 aagaaatagaggatattaggaggggagtgttttgcagggttaatttttcttcataatacaaaaccctcttcaattgggaaactaaaaagttg 33926033  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 165
Target Start/End: Original strand, 50097597 - 50097684
Alignment:
Q  78 tttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattggatgacggttttgtgggttta 165  Q
    |||| |||||| |||| |||||| |||| || ||  | || ||||| ||||||||||||||||||||||||| | ||||| |||||||    
T  50097597 tttggggggtttatttttcttcaaaatataaaaccatccttatttgaggaactaaaaagttgtattggatgaggtttttgagggttta 50097684  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 47742464 - 47742570
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataataca-acactctgctcatttgggg-aactaaaaagttg 139  Q
    ||||| ||||||||||| | ||||  | |||| ||||||| ||||||||||| | ||| ||||||| | || || |||||| |||| |||||||||||||    
T  47742464 aagtggaagaaatagaggacattgagaagggagggctttggggggttaatttttgttcctaatacataaaccctcctcattcggggaaactaaaaagttg 47742563  T
Q  140 tattgga 146  Q
    |||||||    
T  47742564 tattgga 47742570  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 51246629 - 51246579
Alignment:
Q  123 ggggaactaaaaagttgtattggatgacggttttgtgggtttatatgaatt 173  Q
    |||||||| |||| |||||||||| || ||||||| |||||||||||||||    
T  51246629 ggggaactcaaaaattgtattggaggagggttttgagggtttatatgaatt 51246579  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 67 - 144
Target Start/End: Original strand, 69692 - 69769
Alignment:
Q  67 aaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattg 144  Q
    ||||||| || |||| |||||||| || |||||||||||| | || || ||| |||| ||||||||||| ||||||||    
T  69692 aaggggagggttttggggggttaacttttcttcataatactaaaccctcctcgtttgaggaactaaaaaattgtattg 69769  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 42 - 173
Target Start/End: Complemental strand, 35619651 - 35619519
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttg-gggaactaaaaagttgt 140  Q
    |||||||||||||| |  ||||||||||| |  ||||||| | || | |||| |||||| |||| || |||||  |||| || |||||||||||| ||||    
T  35619651 aagtgaaagaaataaatgatattggaaggagg-ggctttgggaggcttatttttcttcaaaatataaaactctaatcatctgagggaactaaaaaattgt 35619553  T
Q  141 attggatgacggttttg-tgggtttatatgaatt 173  Q
    ||||||||| |||||||  |||||| ||||||||    
T  35619552 attggatgagggttttgaagggtttgtatgaatt 35619519  T

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Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 39887048 - 39886968
Alignment:
Q  68 aggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttg--gggaactaaaaagttgtattgga 146  Q
    |||||| ||||||| | |||||| || |||||||||||| | || || ||||||||  |||||||||||| ||||||||||    
T  39887048 aggggagggctttgggtggttaacttttcttcataatactaaaccctcctcatttggtgggaactaaaaaattgtattgga 39886968  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 43036459 - 43036356
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggg-gaactaaaaagttgt 140  Q
    ||||| ||||||||||| | ||||| ||| |  ||||||| ||||||||||| |||||| |||| || || || |||||||||| |||||||||| ||||    
T  43036459 aagtggaagaaatagagtacattgggaggagg-ggctttggggggttaatttttcttca-aatataaaaccctcctcatttgggagaactaaaaaattgt 43036362  T
Q  141 attgga 146  Q
    ||||||    
T  43036361 attgga 43036356  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 34 - 173
Target Start/End: Original strand, 50586973 - 50587110
Alignment:
Q  34 gaaggatcaagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaa 133  Q
    |||||| |||||| ||||||||||| | ||||  |||| | ||||||| |||||| |||| |||||||||||||| |  || ||||||||||  | ||||    
T  50586973 gaaggagcaagtggaagaaatagaggacattgagaggg-agggctttggggggttcatttttcttcataatacaaaatcctcctcatttgggccattaaa 50587071  T
Q  134 aagttgtattggatgacggttttg-tgggtttatatgaatt 173  Q
    |  ||| |||||| || |||||||  |||||||||||||||    
T  50587072 a--ttgcattggaggagggttttgaagggtttatatgaatt 50587110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 34 - 173
Target Start/End: Complemental strand, 52073603 - 52073463
Alignment:
Q  34 gaaggatcaagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcattt-ggggaactaa 132  Q
    |||||| |||||| ||||||||||  | ||||  |||||||||||||| ||| || |||| |||||||||| ||| || || ||||||| |||||||| |    
T  52073603 gaaggagcaagtggaagaaatagatgacattgagaggggaaggctttg-gggtttcatttttcttcataattcaaaaccctcctcatttgggggaactca 52073505  T
Q  133 aaagttgtattggatgacggtttt-gtgggtttatatgaatt 173  Q
    ||| ||||| | || || |||||| | ||||||| |||||||    
T  52073504 aaaattgtactagaggagggttttggagggtttagatgaatt 52073463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 157
Target Start/End: Original strand, 7915438 - 7915562
Alignment:
Q  34 gaaggatcaagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctca-tttggggaactaa 132  Q
    |||||| |||||| || ||||||||||  |||| || ||| ||||||| |||||| |||| ||||||||||| |  || || |||| ||||||| | | |    
T  7915438 gaaggagcaagtggaaaaaatagagaactttgggagaggagggctttggggggttcatttttcttcataatatagaaccctcctcattttgggggattca 7915537  T
Q  133 aaagttgtattggatgacggttttg 157  Q
    ||| |||||||||| || |||||||    
T  7915538 aaaattgtattggaggagggttttg 7915562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 27102973 - 27102869
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgggg-aactaaaaagttg 139  Q
    |||||||||||||||||  ||||| | ||||||  |||||| | |||| |||| |||||||||||||| |  ||  |||||||||| |||| |||| |||    
T  27102973 caagtgaaagaaatagaagatatttggaggggagtgctttgggaggttcatttttcttcataatacaaaatgctcttcatttggggaaactcaaaaattg 27102874  T
Q  140 tattg 144  Q
    |||||    
T  27102873 tattg 27102869  T

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Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 157
Target Start/End: Complemental strand, 28848908 - 28848821
Alignment:
Q  70 gggaaggctttgaggggttaatttgtcttcataatacaacactctgctcattt-ggggaactaaaaagttgtattggatgacggttttg 157  Q
    |||||||||||| ||| || |||| ||||||||| |||| || || ||||||| |||||||| |||| |||||||||| || |||||||    
T  28848908 gggaaggctttg-gggtttcatttttcttcataacacaaaaccctcctcatttgggggaactcaaaaattgtattggaggagggttttg 28848821  T

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Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 32287589 - 32287629
Alignment:
Q  117 tcatttggggaactaaaaagttgtattggatgacggttttg 157  Q
    ||||||| ||||||||||| ||||||||||||| |||||||    
T  32287589 tcatttgaggaactaaaaaattgtattggatgagggttttg 32287629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 156
Target Start/End: Original strand, 36886802 - 36886917
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcattt-ggggaactaaaaagttg 139  Q
    |||||| ||||||||||| | | ||  |||||| ||||||| |||||||| || |||||||||||| | || |  ||||||| ||||||||||||| |||    
T  36886802 caagtggaagaaatagaggaaaatgagaggggagggctttg-ggggttaacttttcttcataatactaaacccccctcattttggggaactaaaaaattg 36886900  T
Q  140 tattggatgacggtttt 156  Q
     |||||| || ||||||    
T  36886901 cattggaggagggtttt 36886917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 41428105 - 41428037
Alignment:
Q  78 tttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattgga 146  Q
    ||||| |||||||||| ||||||||||  || | ||| ||||||||||||||| |||| || |||||||    
T  41428105 tttgaagggttaatttttcttcataatgaaagaatctcctcatttggggaactcaaaaattatattgga 41428037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 2909104 - 2909167
Alignment:
Q  95 tcttcataatacaacactctgctcatttgg-ggaactaaaaagttgtattggatgacggttttg 157  Q
    ||||||||||| || || || ||||||||| ||||||||||| |||||||||| || |||||||    
T  2909104 tcttcataatagaaaaccctactcatttggaggaactaaaaaattgtattggaggagggttttg 2909167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 25561389 - 25561342
Alignment:
Q  117 tcatttggggaactaaaaagttgtattggatgacggttttgtgggttt 164  Q
    ||||||||||||||||||| || ||||||| || ||||||| ||||||    
T  25561389 tcatttggggaactaaaaaattatattggaggagggttttgggggttt 25561342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 41 - 135
Target Start/End: Original strand, 27255141 - 27255236
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttg-gggaactaaaaa 135  Q
    |||||| ||||||||||| | | ||| || ||| ||||||| | |||||| || |||||||||||||| || || ||||||||  |||||||||||    
T  27255141 caagtggaagaaatagaggaaaatgggagaggagggctttgggaggttaacttttcttcataatacaaaaccctcctcatttgaaggaactaaaaa 27255236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 157
Target Start/End: Original strand, 29623163 - 29623285
Alignment:
Q  34 gaaggatcaagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaa 133  Q
    |||||| |||||| ||||||||||| | ||| | |||||| |||||||| || ||||||| |||||||||||||| || || |||||||||| |||| ||    
T  29623163 gaaggagcaagtggaagaaatagaggacattaggaggggagggctttgatgg-ttaatttttcttcataatacaaaaccctcctcatttgggaaactcaa 29623261  T
Q  134 aagttgtattggatgacggttttg 157  Q
    ||||||||||| | || |||||||    
T  29623262 aagttgtattgcaggagggttttg 29623285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 42 - 157
Target Start/End: Original strand, 38639522 - 38639638
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgt 140  Q
    ||||| ||||||||||| | | ||| || |||||| |||| |||||||| || |||||||||||||| || || ||||||||| ||||||||||| ||||    
T  38639522 aagtggaagaaatagaggaaaatgggagaggaaggttttggggggttaacttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgt 38639621  T
Q  141 attggatgacggttttg 157  Q
    |||||| || |||||||    
T  38639622 attggaggagggttttg 38639638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 164
Target Start/End: Original strand, 3537141 - 3537264
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcattt-ggggaactaaaaagttgt 140  Q
    ||||| ||||||||||| | | ||| |||||| ||||||| | |||||| || |||||||||||||| || || ||||||| ||||||||||||| ||||    
T  3537141 aagtggaagaaatagaggaaaatgggaggggagggctttgggaggttaacttttcttcataatacaaaaccctcctcatttgggggaactaaaaaattgt 3537240  T
Q  141 attggatgacggttttgtgggttt 164  Q
    |||||| ||  |||||| ||||||    
T  3537241 attggaggagagttttgggggttt 3537264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 34 - 135
Target Start/End: Original strand, 30995796 - 30995896
Alignment:
Q  34 gaaggatcaagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaa 133  Q
    |||||| ||| || ||||||||||  ||||||| || | |||| |||| | ||||||||| |||||||||||||| ||||| ||||||||||||||||||    
T  30995796 gaaggaacaaatggaagaaatagaagatattgggagag-aagggtttgggaggttaatttttcttcataatacaaaactctactcatttggggaactaaa 30995894  T
Q  134 aa 135  Q
    ||    
T  30995895 aa 30995896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 33944787 - 33944672
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgt 140  Q
    ||||| ||||||||||| | | ||| || ||| ||||||| |||||||| || |||||||||||||| || || ||||||||| ||||||||||| ||||    
T  33944787 aagtggaagaaatagaggaaaatgggagaggagggctttg-ggggttaacttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgt 33944689  T
Q  141 attggatgacggttttg 157  Q
    |||||| || |||||||    
T  33944688 attggaggagggttttg 33944672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 157
Target Start/End: Original strand, 35283013 - 35283136
Alignment:
Q  34 gaaggatcaagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcattt-ggggaactaa 132  Q
    |||||| |||||| ||||||||||||  ||||| ||| | || ||||| ||||||||||| |||||| |||| || || || ||||||| ||||||||||    
T  35283013 gaaggagcaagtggaagaaatagagatcattgggaggaggag-ctttggggggttaatttttcttcaaaatataaaaccctcctcatttgggggaactaa 35283111  T
Q  133 aaagttgtattggatgacggttttg 157  Q
    ||| |||||||||| || |||||||    
T  35283112 aaaattgtattggaggaaggttttg 35283136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 53664712 - 53664632
Alignment:
Q  77 ctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgtattggatgacggtttt 156  Q
    |||||||||||||| || |||||||||||||| || || ||||||||| ||||||||||| |||||||||| || ||||||    
T  53664712 ctttgaggggttaacttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggtttt 53664632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 33909064 - 33908981
Alignment:
Q  75 ggctttgaggggttaatttgtcttcataatacaacactctgctcatttgggg-aactaaaaagttgtattggatgacggttttg 157  Q
    ||||||| ||| |||| || |||||||||||||| || || ||||||||||| |||||||||||||||||||| || |||||||    
T  33909064 ggctttgggggattaacttttcttcataatacaaaaccctcctcatttggggaaactaaaaagttgtattggaggagggttttg 33908981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 25754248 - 25754145
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgt 140  Q
    ||||||||||||||||| ||| ||| || ||| ||||||  |||||| | || |||||||||||||| || || ||||||||| ||||||||||| ||||    
T  25754248 aagtgaaagaaatagaggataatgggagaggagggcttt--ggggttgacttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgt 25754151  T
Q  141 attgga 146  Q
    ||||||    
T  25754150 attgga 25754145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 146
Target Start/End: Complemental strand, 40119012 - 40118927
Alignment:
Q  62 attggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcattt-ggggaactaaaaagttgtattgga 146  Q
    ||||| |||||| ||||||| ||||||||||| ||||||| | |||| || || ||||||| ||||||||||||| ||||||||||    
T  40119012 attgggaggggagggctttggggggttaatttttcttcattaaacaaaaccctcctcatttgggggaactaaaaaattgtattgga 40118927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 70 - 173
Target Start/End: Original strand, 49183657 - 49183761
Alignment:
Q  70 gggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattggatgacggtttt-gtgggtttatat 168  Q
    |||| ||||||| |||||||| || |||||||||||| |  | || ||||||||| |||||||||| ||||||| || || |||||| | ||||||||||    
T  49183657 gggagggctttggggggttaacttttcttcataatactaatccctcctcatttggagaactaaaaaattgtattagaggagggttttggagggtttatat 49183756  T
Q  169 gaatt 173  Q
    |||||    
T  49183757 gaatt 49183761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 173
Target Start/End: Complemental strand, 1133046 - 1132940
Alignment:
Q  68 aggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcattt-ggggaactaaaaagttgtattggatgacggtttt-gtgggttta 165  Q
    ||||||||| |||| |||||| ||||  ||||||||||||| ||||| ||||||| |||||||| |||| |||||||||| || |||||| | |||||||    
T  1133046 aggggaaggttttg-ggggttcattttacttcataatacaaaactctcctcattttggggaactcaaaaattgtattggaggagggttttggagggttta 1132948  T
Q  166 tatgaatt 173  Q
     |||||||    
T  1132947 catgaatt 1132940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 146
Target Start/End: Complemental strand, 45571085 - 45570986
Alignment:
Q  48 aagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcattt-ggggaactaaaaagttgtattgga 146  Q
    ||||||||||| | | |||||||||| |||| || |||||| |||| |||||||||||  | || || ||||||| ||||||||||||| ||||||||||    
T  45571085 aagaaatagaggaaaatggaaggggagggctatggggggttcatttttcttcataatattaaaccctcctcatttgggggaactaaaaaattgtattgga 45570986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 146
Target Start/End: Complemental strand, 50535244 - 50535145
Alignment:
Q  48 aagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcattt-ggggaactaaaaagttgtattgga 146  Q
    ||||||||||| | | || || || |||||||||||||||||| ||  ||||||||||| | || || ||||||| ||||||||||||| ||||||||||    
T  50535244 aagaaatagaggaaaatgaaaaggaaaggctttgaggggttaactttacttcataatactaaaccctcctcatttaggggaactaaaaaattgtattgga 50535145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 48909021 - 48908906
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgt 140  Q
    ||||| ||||||||||| | | ||| || ||||||||||| |||||||| || |||||||||||||| || ||  | |||||| ||||||||||| || |    
T  48909021 aagtggaagaaatagaggaaaatgggagaggaaggctttg-ggggttaacttttcttcataatacaaaaccctcataatttggaggaactaaaaaattat 48908923  T
Q  141 attggatgacggttttg 157  Q
    |||||| || |||||||    
T  48908922 attggaggagggttttg 48908906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 22225341 - 22225404
Alignment:
Q  84 gggttaatttgtcttcataatacaacactctgctcattt-ggggaactaaaaagttgtattgga 146  Q
    |||||||||| |||||||||||| | ||||| ||||||| ||||||||||||| || |||||||    
T  22225341 gggttaatttttcttcataatactaaactctcctcatttaggggaactaaaaaattatattgga 22225404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 27197238 - 27197301
Alignment:
Q  95 tcttcataatacaacactctgctcatttggggaact-aaaaagttgtattggatgacggttttg 157  Q
    |||||||||||||| || || |||||||| |||||| ||||| ||||||||||||| |||||||    
T  27197238 tcttcataatacaaaaccctcctcatttgaggaactaaaaaaattgtattggatgagggttttg 27197301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 37674289 - 37674183
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttg 139  Q
    |||||| |||||||| || | | ||| || ||| ||||||| |||||||| || ||||||| |||||| || || ||||||| | ||||||||||| |||    
T  37674289 caagtggaagaaataaaggaaaatgggagaggagggctttggggggttaacttttcttcatgatacaaaaccctcctcattttgaggaactaaaaaattg 37674190  T
Q  140 tattgga 146  Q
    |||||||    
T  37674189 tattgga 37674183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 135
Target Start/End: Complemental strand, 49860658 - 49860565
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaa 135  Q
    ||||| ||||||| |||| ||||||| ||| || |||| |  |||||| |||| | |||||||||||| | ||| ||||||||||||||||||||    
T  49860658 caagtaaaagaaacagaggatattgggaggagagggctgttgggggttcattttt-ttcataatacaaaattctcctcatttggggaactaaaaa 49860565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 156
Target Start/End: Original strand, 51686484 - 51686554
Alignment:
Q  86 gttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattggatgacggtttt 156  Q
    ||||| || |||||||||||| | || |  |||||||||||||||||||| |||||||||| || ||||||    
T  51686484 gttaacttttcttcataatactaaacccccctcatttggggaactaaaaaattgtattggaggagggtttt 51686554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 21777755 - 21777679
Alignment:
Q  70 gggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggg-gaactaaaaagttgtattgga 146  Q
    |||||||||||| |||||| |||| |||||||||||||| |||||  ||||||||| ||| | |||| ||||||||||    
T  21777755 gggaaggctttg-ggggttcatttttcttcataatacaaaactctcatcatttgggagaaatcaaaaattgtattgga 21777679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 48444514 - 48444555
Alignment:
Q  116 ctcatttggggaactaaaaagttgtattggatgacggttttg 157  Q
    |||||||||||| ||||||| ||||||||||||| |||||||    
T  48444514 ctcatttggggatctaaaaaattgtattggatgagggttttg 48444555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 50948181 - 50948254
Alignment:
Q  84 gggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgtattggatgacggtttt 156  Q
    ||||||| || |||||||||||||| || || |||| |||| ||||||||||| |||||||||| || ||||||    
T  50948181 gggttaacttttcttcataatacaaaaccctcctcagttggaggaactaaaaaattgtattggaggagggtttt 50948254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 54089553 - 54089496
Alignment:
Q  90 atttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattggat 147  Q
    |||| |||| ||||||||| ||||| |||||||| | ||||||||| |||||||||||    
T  54089553 atttttctttataatacaaaactcttctcatttgagaaactaaaaaattgtattggat 54089496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 517738 - 517695
Alignment:
Q  83 ggggttaatttgtcttcataatacaacactctgctcatttgggg 126  Q
    ||||||||||| |||||||||||||| || || |||||||||||    
T  517738 ggggttaatttttcttcataatacaaaaccctcctcatttgggg 517695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 1340005 - 1339930
Alignment:
Q  83 ggggttaatttgtcttcataatacaacactctgctcatttg-gggaactaaaaagttgtattggatgacggttttg 157  Q
    ||||||||||| |||||||||||||  |||||  |||||||  |||||| |||| |||||||||| || |||||||    
T  1340005 ggggttaatttttcttcataatacataactctcatcatttgaaggaactcaaaaattgtattggaagaaggttttg 1339930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 11500045 - 11500142
Alignment:
Q  48 aagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggg-gaactaaaaagttgtattgga 146  Q
    ||||||||||  |||||| |||||||||  |||| ||||||| ||| ||||||||||| || || || ||||||||||  ||||||||| ||||||||||    
T  11500045 aagaaatagatgatattgaaaggggaagattttg-ggggttatttt-tcttcataatagaaaaccctcctcatttgggataactaaaaaattgtattgga 11500142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 15499446 - 15499342
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttggg-gaactaaaaagttg 139  Q
    |||||| ||||||||||  | |||| ||||||||||||||  |||||| | || |||||||||||||| |   | |||||||||| ||||| |||| |||    
T  15499446 caagtggaagaaatagattacattgaaaggggaaggcttt--ggggttcacttttcttcataatacaaaatcttcctcatttgggagaactcaaaaattg 15499349  T
Q  140 tattgga 146  Q
    |||||||    
T  15499348 tattgga 15499342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 49855964 - 49855890
Alignment:
Q  33 tgaaggatcaagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaa 108  Q
    ||||||| |||||||||||||||||  | ||||  || |||||| |||| |||||| |||| ||||||||||||||    
T  49855964 tgaaggagcaagtgaaagaaatagatgacattgagagaggaaggttttg-ggggttcatttttcttcataatacaa 49855890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 157
Target Start/End: Complemental strand, 50345746 - 50345679
Alignment:
Q  90 atttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattggatgacggttttg 157  Q
    |||| |||||| |||| || || || ||| |||||||||||||| | ||||||||||||| |||||||    
T  50345746 atttttcttcaaaatataaaacactcctcgtttggggaactaaagaattgtattggatgagggttttg 50345679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 93618 - 93538
Alignment:
Q  78 tttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgtattggatgacggttttg 157  Q
    |||| |||||||| || |||||||||||||| ||||| ||||||||| ||||||||||| |||||||||| || |||||||    
T  93618 tttggggggttaacttttcttcataatacaaaactctcctcatttggaggaactaaaaaattgtattggaggagggttttg 93538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 35; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 42 - 143
Target Start/End: Original strand, 26312 - 26414
Alignment:
Q  42 aagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgt 140  Q
    ||||| ||||||||||| | | ||| || ||| ||||||| |||| ||| || |||||||||||||| || || ||||||||| ||||||||||| ||||    
T  26312 aagtggaagaaatagaggaaaatgggagaggagggctttggggggataacttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgt 26411  T
Q  141 att 143  Q
    |||    
T  26412 att 26414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 344 - 228
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttg 139  Q
    |||||| ||||||||||| | | ||| || |||  |||||| |||||||| || |||||||||||||| || || || |||||| ||||||||||| |||    
T  344 caagtggaagaaatagaggaaaatgggagaggagagctttg-ggggttaacttttcttcataatacaaaaccctccttatttggaggaactaaaaaattg 246  T
Q  140 tattggatgacggttttg 157  Q
    ||||||| || |||||||    
T  245 tattggaggagggttttg 228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 34; Significance: 0.0000000002; HSPs: 4)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 796 - 719
Alignment:
Q  84 gggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattggatgacggttttgtggg 161  Q
    ||||||| || |||||||||||||| || || |||||||| ||||||||||  |||| ||||| || |||||||||||    
T  796 gggttaacttttcttcataatacaaaaccctcctcatttgaggaactaaaacattgtcttggaggatggttttgtggg 719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 3673 - 3596
Alignment:
Q  84 gggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattggatgacggttttgtggg 161  Q
    ||||||| || |||||||||||||| || || |||||||| ||||||||||  |||| ||||| || |||||||||||    
T  3673 gggttaacttttcttcataatacaaaaccctcctcatttgaggaactaaaacattgtcttggaggatggttttgtggg 3596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #3
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 6862 - 6789
Alignment:
Q  85 ggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgtattggatgacggttttg 157  Q
    |||||| || |||||||||||||| || || ||||||||| ||||||||||  |||||||||| || |||||||    
T  6862 ggttaacttttcttcataatacaaaaccctcctcatttggaggaactaaaacattgtattggaggagggttttg 6789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #4
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 7845 - 7772
Alignment:
Q  85 ggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgtattggatgacggttttg 157  Q
    |||||| || |||||||||||||| || || ||||||||| ||||||||||  |||||||||| || |||||||    
T  7845 ggttaacttttcttcataatacaaaaccctcctcatttggaggaactaaaacattgtattggaggagggttttg 7772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 157
Target Start/End: Original strand, 15887 - 15966
Alignment:
Q  78 tttgaggggttaatttgtcttcataatacaacactctgctcatttggggaactaaaaagttgtattggatgacggttttg 157  Q
    ||||| |||||||||| ||||||||||  || | ||| ||||||||||||| | |||| |||||||||| || |||||||    
T  15887 tttgaagggttaatttttcttcataatgaaaaaatctcctcatttggggaatttaaaaattgtattggaggagggttttg 15966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 2171 - 2066
Alignment:
Q  41 caagtgaaagaaatagagaatattggaaggggaaggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttg 139  Q
    |||||| ||||||||||  | | ||| || ||| ||||||| |||||||| || |||||||||||||| || || ||||||||| |||||| |||| |||    
T  2171 caagtggaagaaatagaagaaaatgggagaggagggctttg-ggggttaacttttcttcataatacaaaaccctcctcatttggaggaactgaaaaattg 2073  T
Q  140 tattgga 146  Q
    |||||||    
T  2072 tattgga 2066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 29211 - 29282
Alignment:
Q  75 ggctttgaggggttaatttgtcttcataatacaacactctgctcatttgg-ggaactaaaaagttgtattgga 146  Q
    ||||||||||| |||| || |||||||||||||| || ||  |||||||| ||||||||||| ||||||||||    
T  29211 ggctttgaggg-ttaacttttcttcataatacaaaaccctcatcatttggaggaactaaaaaattgtattgga 29282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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