View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: F9310-LTR4-TNT-insertion-3 (Length: 251)
Name: F9310-LTR4-TNT-insertion-3
Description: F9310-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] F9310-LTR4-TNT-insertion-3
Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 47018542 - 47018310
Alignment:
Q
10
atccccgtgtgattatggaaataaaagctcctttgaagtgcagacggctcctatcagtgatggtgttcttccaggaataatacgccaactagtgcttgag
109
Q
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
47018542
atccccgtgtgattatggaaataaaagctcttttgaagtgcagacggctcctatcagtgatggtgttcttccaggaataatacgccaactagtgcttgag
47018443
T
Q
110
tatggtttggttataaatataatctagnnnnnnnactgttatgtttttccttgacgacaaaagaactacaccccttctagaaaaatttgccaaaatttta
209
Q
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
47018442
tatggtttggttataaatataatctagtttttttactgttatgtttttccttgacgacaaaagaactacaccccttctagaaaaatttgccaaaatttta
47018343
T
Q
210
tgttatttacagtgggctaaagttcaacaattg
242
Q
|||||||||||||||||||||||||||||||||
T
47018342
tgttatttacagtgggctaaagttcaacaattg
47018310
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 10719296 - 10719183
Alignment:
Q
19
tgattatggaaataaaagctcctttgaagtgcagacggctcctatcagtgatggtgttcttccaggaataatacgccaactagtgcttgagtatggtttg
118
Q
|||| |||||||||||| ||| |||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
T
10719296
tgatcatggaaataaaaactcttttgaagtgcagacagctcctataagtgatggtgttcttccagggataatacgtcaactagtgcttgagtatggtttg
10719197
T
Q
119
gttataaatataat
132
Q
|||||||| ||||
T
10719196
tttataaatttaat
10719183
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 47047494 - 47047381
Alignment:
Q
19
tgattatggaaataaaagctcctttgaagtgcagacggctcctatcagtgatggtgttcttccaggaataatacgccaactagtgcttgagtatggtttg
118
Q
|||| |||||||||||| ||| |||||||||||||| |||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||
T
47047494
tgatcatggaaataaaaactcttttgaagtgcagacagctcctatcaatgatggtgttcttccagggataatacgtcaactagtgcttgagtatggtttg
47047395
T
Q
119
gttataaatataat
132
Q
|||||||| ||||
T
47047394
tttataaatctaat
47047381
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 10714489 - 10714602
Alignment:
Q
19
tgattatggaaataaaagctcctttgaagtgcagacggctcctatcagtgatggtgttcttccaggaataatacgccaactagtgcttgagtatggtttg
118
Q
|||| ||||||| |||| ||| ||| |||||||||| |||||| |||||||||||||| ||| |||||||| ||||||||||||||||||| || |
T
10714489
tgatcatggaaaaaaaaactcttttaaagtgcagacaactcctaatagtgatggtgttctattagggataatacgtcaactagtgcttgagtatgattcg
10714588
T
Q
119
gttataaatataat
132
Q
|||||||| ||||
T
10714589
tttataaatctaat
10714602
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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