View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: F9310-LTR4-TNT-insertion-4 (Length: 243)
Name: F9310-LTR4-TNT-insertion-4
Description: F9310-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] F9310-LTR4-TNT-insertion-4
[» ] scaffold2079 (2 HSPs)
Alignment Details
Target: scaffold2079 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 264 - 396
Alignment:
Q
8
ttttttgcaatattaagatagcctactatacttaatcgggtagaatttttctcatattgcgtaccccgaatccgcccataggtgaccaacatgaattgca
107
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
264
ttttttgcaatattaagatagcctactatacttaatcgggtagaatttttctcatattgcgtaccccgaatccgcccataggtgaccaacatgaattgca
363
T
Q
108
aattatgcgactatgctcaaatgcacaagttgg
140
Q
|||||||||||||||||||||||||||||||||
T
364
aattatgcgactatgctcaaatgcacaagttgg
396
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 234
Target Start/End: Original strand, 461 - 490
Alignment:
Q
205
ggaatctatttggtgggacaggttcaattg
234
Q
||||||||||||||||||||||||||||||
T
461
ggaatctatttggtgggacaggttcaattg
490
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 6242084 - 6242208
Alignment:
Q
8
ttttttgcaatattaagatagcctactatacttaatcgggtagaatttttctcatattgcgtaccccgaatccgcccataggtgaccaacatgaattgca
107
Q
||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||||||||| |||||||| ||||| |||| ||||||||||||||
T
6242084
ttttttgcaatattaagttagtctactatacttaaccgggt-------ttctcatattgcgtaccgcgaatccgtccatacgtgatcaacatgaattgca
6242176
T
Q
108
aattatgcgactatgctcaaatgcacaagttg
139
Q
||||||| ||||||||||||||| ||||||||
T
6242177
aattatgtgactatgctcaaatgaacaagttg
6242208
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 6242274 - 6242302
Alignment:
Q
205
ggaatctatttggtgggacaggttcaatt
233
Q
|||||||||||||||||||||||||||||
T
6242274
ggaatctatttggtgggacaggttcaatt
6242302
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 10850749 - 10850715
Alignment:
Q
9
tttttgcaatattaagatagcctactatacttaat
43
Q
||||||||||||||||||||| |||||||||||||
T
10850749
tttttgcaatattaagatagcttactatacttaat
10850715
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 10878263 - 10878229
Alignment:
Q
9
tttttgcaatattaagatagcctactatacttaat
43
Q
||||||||||||||||||||| |||||||||||||
T
10878263
tttttgcaatattaagatagcttactatacttaat
10878229
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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