View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: F9310-LTR4-TNT-insertion-5 (Length: 357)
Name: F9310-LTR4-TNT-insertion-5
Description: F9310-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] F9310-LTR4-TNT-insertion-5
Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 10 - 319
Target Start/End: Original strand, 40663139 - 40663448
Alignment:
Q
10
aaaggagtaatagaatgcagaagatgcattggattggaggaggtgatgctatggtagcgctgtgctgaaaatcaagcgtgcgtgaatgaatattattgtt
109
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
40663139
aaaggagtaatagaatgcagaagatgcattggattggaggaggtgatgctatggtagcgctgtgctgaaaatcaagcgtgcgtgaatgaatattattgtt
40663238
T
Q
110
gtttttcatgttactatgtataagtaataaatctgctcatgtttacaaccagcttcgttggttggtcatcatctgttcaaactttttctcttttgactct
209
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
40663239
gtttttcatgttactatgtataagtaataaatctgctcatgtttacaaccagcttcgttggttggtcatcatctgttcaaactttttctcttttgactct
40663338
T
Q
210
ccaaactctccttcagtacctaactttcaacctaggacctaaggttgaggtttgtataaacctcttaggaaaccgcatacataagggaatatgaaattaa
309
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
40663339
ccaaactctccttcagtacctaactttcaacctaggacctaaggttgaggtttgtataaacctcttaggaaaccgcatacataagggaatatgaaattaa
40663438
T
Q
310
gcattttgat
319
Q
||||||||||
T
40663439
gcattttgat
40663448
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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