View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: F9310-LTR4-TNT-insertion-7 (Length: 223)
Name: F9310-LTR4-TNT-insertion-7
Description: F9310-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] F9310-LTR4-TNT-insertion-7
Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 6 - 213
Target Start/End: Original strand, 32164626 - 32164833
Alignment:
Q
6
cacaaattacacaaaacatagttgcagttttgcatttaagtagactttgttcgcagtctttctgctagttactaaatattgtgttaataaatatgaaagt
105
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
32164626
cacaaattacacaaaacatagttgcagttttgcatttaagtagactttgttcgcagtctttctgctagttactaaatattgtgttaataaatatgaaagt
32164725
T
Q
106
tagaagactaaggaattacaagtaaatcttctcctgttttctttatatcaattatggaagcaccatttgttgcctcagaaatgagtgaagtatcatcaga
205
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
32164726
tagaagactaaggaattacaagtaaatcttctcctgttttctttatatcaattatggaagcaccatttgttgcctcagaaatgagtgaagtatcatcaga
32164825
T
Q
206
attgaatt
213
Q
||||||||
T
32164826
attgaatt
32164833
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 32167642 - 32167710
Alignment:
Q
145
tctttatatcaattatggaagcaccatttgttgcctcagaaatgagtgaagtatcatcagaattgaatt
213
Q
||||||||||||| |||||||||||||| ||| |||||||||||||||| |||| |||||||||||
T
32167642
tctttatatcaataatggaagcaccattcaatgctccagaaatgagtgaagtgtcattagaattgaatt
32167710
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 27359460 - 27359395
Alignment:
Q
145
tctttatatcaattatggaagcaccatttgttgcctcagaaatgagtgaagtatcatcagaattga
210
Q
|||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| ||||||
T
27359460
tctttatatcaattatagaagcaccacccaatgcttcagaaatgagtgaagtatcatcaaaattga
27359395
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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