View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: F9310-LTR4-TNT-insertion-8 (Length: 209)
Name: F9310-LTR4-TNT-insertion-8
Description: F9310-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] F9310-LTR4-TNT-insertion-8
[» ] scaffold0458 (2 HSPs)
Alignment Details
Target: scaffold0458 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 3126 - 2979
Alignment:
Q
10
aacaaaaagtacttgatgatggttggagacggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggcta
109
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
3126
aacaaaaagtacttgatgatggttggagacggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggcta
3027
T
Q
110
catttggtaagcaaatttaatacttggacatattcaatataccattac
157
Q
||||||||||||||||||||||||||||||||||||||||||||||||
T
3026
catttggtaagcaaatttaatacttggacatattcaatataccattac
2979
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 13167 - 13020
Alignment:
Q
10
aacaaaaagtacttgatgatggttggagacggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggcta
109
Q
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
13167
aacaaaaagtacttgatgatggttggagagggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggcta
13068
T
Q
110
catttggtaagcaaatttaatacttggacatattcaatataccattac
157
Q
||||||||||||||||||||||||||||||||||||||||||||||||
T
13067
catttggtaagcaaatttaatacttggacatattcaatataccattac
13020
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 7e-76; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 39450495 - 39450642
Alignment:
Q
10
aacaaaaagtacttgatgatggttggagacggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggcta
109
Q
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
39450495
aacaaaaagtacttgatgatggttggagagggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggcta
39450594
T
Q
110
catttggtaagcaaatttaatacttggacatattcaatataccattac
157
Q
||||||||||||||||||||||||||||||||||||||||||||||||
T
39450595
catttggtaagcaaatttaatacttggacatattcaatataccattac
39450642
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 39459882 - 39460029
Alignment:
Q
10
aacaaaaagtacttgatgatggttggagacggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggcta
109
Q
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
39459882
aacaaaaagtacttgatgatggttggagagggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggcta
39459981
T
Q
110
catttggtaagcaaatttaatacttggacatattcaatataccattac
157
Q
||||||||||||||||||||||||||||||||||||||||||||||||
T
39459982
catttggtaagcaaatttaatacttggacatattcaatataccattac
39460029
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 39471367 - 39471514
Alignment:
Q
10
aacaaaaagtacttgatgatggttggagacggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggcta
109
Q
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
39471367
aacaaaaagtacttgatgatggttggagagggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggcta
39471466
T
Q
110
catttggtaagcaaatttaatacttggacatattcaatataccattac
157
Q
||||||||||||||||||||||||||||||||||||||||||||||||
T
39471467
catttggtaagcaaatttaatacttggacatattcaatataccattac
39471514
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 24061770 - 24061651
Alignment:
Q
10
aacaaaaagtacttgatgatggttggagacggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggcta
109
Q
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
T
24061770
aacaaaaagtacttgatgatggttggagagggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcagcca
24061671
T
Q
110
catttggtaagcaaatttaa
129
Q
| ||||||||| ||| ||||
T
24061670
cctttggtaagaaaaattaa
24061651
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 10 - 124
Target Start/End: Complemental strand, 44476015 - 44475901
Alignment:
Q
10
aacaaaaagtacttgatgatggttggagacggaatcaatcaaacagttatcacaggagaccacaatgttgttgatggtttcacaacattcaattcggcta
109
Q
||||| ||||||||||||||||||||||| || || |||| ||| ||||||| || || || |||||| ||||||||| ||||| |||||||| || |
T
44476015
aacaagaagtacttgatgatggttggagatgggattaatcgaacgattatcactggtgatcataatgttattgatggttctacaacgttcaattcagcaa
44475916
T
Q
110
catttggtaagcaaa
124
Q
|||||||||||||||
T
44475915
catttggtaagcaaa
44475901
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
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