View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9311-LTR4-TNT-insertion-17 (Length: 455)
Name: F9311-LTR4-TNT-insertion-17
Description: F9311-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9311-LTR4-TNT-insertion-17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 8 - 445
Target Start/End: Original strand, 4596916 - 4597353
Alignment:
| Q |
8 |
cacggaatccagtttcaccacttataaactcaatgtcaacgtgagattcttaacaagacgagactaataaataaatcacattacaatttgggttgcacct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4596916 |
cacggaatccagtttcaccacttataaactcaatgtcaacgtgagattcttaacaagacgagactaataaataaatcacattacaatttgggttgcacct |
4597015 |
T |
|
| Q |
108 |
aattcaactcaaaaagtaagtaaatattgtccattatttataaacacaaacatataatgtggaatcttaacaagaacattaaacagaaatgaaaatatga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4597016 |
aattcaactcaaaaagtaagtaaatattgtccattatttataaacacaaacatataatgtggaatcttaacaagaacattaaacagaaatgaaaatatga |
4597115 |
T |
|
| Q |
208 |
gttgttaaagcaaaacaaagcaagaatggatgttactgtgcgtgagaaaaagttggaaagagaagcaccccatcctccaacatcaaaggattcctcagtg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4597116 |
gttgttaaagcaaaacaaagcaagaatggatgttactgtgcgtgagaaaaagttggaaagagaagcaccccatcctccaacatcaaaggattcctcagtg |
4597215 |
T |
|
| Q |
308 |
attgagtcaccaaaaagatatatttgtggcctcttagtcatgtttgatcatacaattgtatggttggacttggtgggttcagttcaggtgaaagaaatgg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4597216 |
attgagtcaccaaaaagatatatttgtggcctcttagtcatgtttgatcatacaattgtatggttggacttggtgggttcagttcaggtgaaagaaatgg |
4597315 |
T |
|
| Q |
408 |
aagagggtcttagatcatataactatgttgatgcatta |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4597316 |
aagagggtcttagatcatataactatgttgatgcatta |
4597353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 312
Target Start/End: Original strand, 4587590 - 4587651
Alignment:
| Q |
251 |
gagaaaaagttggaaagagaagcaccccatcctccaacatcaaaggattcctcagtgattga |
312 |
Q |
| |
|
|||||| |||||| || |||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
4587590 |
gagaaatagttggcaaaagaagcaccccatcctccaacaccaaaggattcttcagtgattga |
4587651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 325
Target Start/End: Original strand, 4602126 - 4602206
Alignment:
| Q |
245 |
gtgcgtgagaaaaagttggaaagagaagcaccccatcctccaacatcaaaggattcctcagtgattgagtcaccaaaaaga |
325 |
Q |
| |
|
||||| |||||| ||||| ||||||||||||||||||||||||| || || || ||||||||||| ||||| |||||| |
|
|
| T |
4602126 |
gtgcgagagaaatggttggcaagagaagcaccccatcctccaacagagaatgaatcttcagtgattgaatcaccgaaaaga |
4602206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2381 times since January 2019
Visitors: 853